result

Gene information

Detail information of AfisC8G02916

Location

Gene	Chr	Start	End	Strand
AfisC8G02916	chr8	558474684	558476223	+

Sequences

CDS

>AfisC8G02916
ATGGAAAGATCTAGAAAAAGCACCGAGAGCTCCGATACAAGTCGCAGACAGAAGAAAGGCAAAGGATTACAAACAACTTCTCTTACCAAGGATCTGAAACAAGCGCCCATTTTTACAGAGGCACCATGTTTAAACACACAGCATCCATCTCTACACTCTCCTTGCTATTCTTCAGTCTCAAACCCTCCTACTCCCAAGTCTATACCCAACTTCCCTTTTCTACCCTCCTCAACTCTGTACCCACAACAACAACAGATGATTTCTTTTGGGCATGAAACTCCACAGTTTCAGGTATTCACAGCACAACAGCAGCAGCAACTGTACCAGGAACAGCTATTCAGAACCTGGAGCCAGGCCCTGAATCTAAGTCCTCGAGGTCACAGAATGATGATGGATCGAATAGCTGCCACAAACACACTGATTCAACAGCAGCAGCAGCAGCAGGGAATGATGCCACTAGTTCATACACCTACGAAGCTTTACAGAGGAGTTAGGCAGAGGCATTGGGGCAAATGGGTGGCTGAGATTCGTCTACCCAAAAACCGCACCAGACTCTGGCTGGGCACGTTCGACACAGCCGAGGATGCTGCCATGGCCTACGACCGTGAGGCTTTCAAATTGAGAGGCGAAAACGCACGCCTCAACTTCCCTCATCTCTTCCTTGGCAAAGACAAAGACAAATCTAATACCACTGTTAATGAACCTTCATCTTCTGCTTCAGAAATGCCAGTACCTACTGCTGAAGCAGTTTCTGTGACTAATGAAACAGTTGAAGAAAAATCGATGATGTCTGAAACGAGTTCGCAGCAATCTCATTCTGAACTGATGTGGGGAGATGCTGATGAAGCGTGGTTTAACACTTGGGGGCCAGGGAGCTCTGTTTGGGATGATGTAGATGGAGCTAATAGTCTCCTTCTTCAGTCTGCAAATGCAAATGCAACTGCATCTGCAGTAGATAATCAAGAAACAAGCGCTTATGCTGACAATTCTACTTCGCAAGATTCATACATTTCGAATATGTTCGTGTGGAAGGATGCATAG

Protein

Gene

>AfisC8G02916
ACTCCACCTCTCCTTCATTTTACCTCACAAATCATTAGCGTTCACTTCCTCCCCTCTTCACTTCACCGGCTGCCCTCATCTCTTTCCAATTAATCTCTTCTACCATACTTGTCACTCTTTACCGTTCACCTATTCACAGGGGCAGCCGGTAATCCATCCATAACCAATCCTTCCATGGAAAGATCTAGAAAAAGCACCGAGAGCTCCGATACAAGTCGCAGACAGAAGAAAGGCAAAGGATTACAAACAACTTCTCTTACCAAGGATCTGAAACAAGCGCCCATTTTTACAGAGGCACCATGTTTAAACACACAGCATCCATCTCTACACTCTCCTTGCTATTCTTCAGTCTCAAACCCTCCTACTCCCAAGTCTATACCCAACTTCCCTTTTCTACCCTCCTCAACTCTGTACCCACAACAACAACAGATGATTTCTTTTGGGCATGAAACTCCACAGTTTCAGGTATTCACAGCACAACAGCAGCAGCAACTGTACCAGGAACAGCTATTCAGAACCTGGAGCCAGGCCCTGAATCTAAGTCCTCGAGGTCACAGAATGATGATGGATCGAATAGCTGCCACAAACACACTGATTCAACAGCAGCAGCAGCAGCAGGGAATGATGCCACTAGTTCATACACCTACGAAGCTTTACAGAGGAGTTAGGCAGAGGCATTGGGGCAAATGGGTGGCTGAGATTCGTCTACCCAAAAACCGCACCAGACTCTGGCTGGGCACGTTCGACACAGCCGAGGATGCTGCCATGGCCTACGACCGTGAGGCTTTCAAATTGAGAGGCGAAAACGCACGCCTCAACTTCCCTCATCTCTTCCTTGGCAAAGACAAAGACAAATCTAATACCACTGTTAATGAACCTTCATCTTCTGCTTCAGAAATGCCAGTACCTACTGCTGAAGCAGTTTCTGTGACTAATGAAACAGTTGAAGAAAAATCGATGATGTCTGAAACGAGTTCGCAGCAATCTCATTCTGAACTGATGTGGGGAGATGCTGATGAAGCGTGGTTTAACACTTGGGGGCCAGGGAGCTCTGTTTGGGATGATGTAGATGGAGCTAATAGTCTCCTTCTTCAGTCTGCAAATGCAAATGCAACTGCATCTGCAGTAGATAATCAAGAAACAAGCGCTTATGCTGACAATTCTACTTCGCAAGATTCATACATTTCGAATATGTTCGTGTGGAAGGATGCATAGTCATCGTTTTAGGTCATTGGTTTCACAATTTTTACAGTGCAGCCATGGCGTTAGTTAAAGAAACCCTGCACGTCTGCATATTTTAGGATAGCAGGTTTCACTTCCAGCTCTCTTCAGGTTTTATTTGCAAGAGGACTGTTATTACTATACATGTCGTTTGGTCAGTCAGTTCATGTCTTTTATTTGAGAGTTGGATGTAACGGAGTTTGAGATGGCTTTTAAGTCTCTTCTTCATGTTCATGATTGTACTAAGTTTGTTATGTAATGTTTGTATTATGGTTTGGTATTATTGAAATAAGATATTTTAAGCACATTTCGTATTCAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020694424.1	2.0e-55	ethylene-responsive transcription factor ERF053-like
Swissprot	Q9SKT1.1	1.7e-35	Ethylene-responsive transcription factor ERF053
trEMBL	A0A8K0IHA8	1.1e-55	Ethylene-responsive transcription factor RAP2-4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G20880.1	48.28	3e-42	169	AtERF53;ERF53	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02916	AT2G20880.1	232	70	7	82	297	116	313	48.28	3e-42	169
AfisC8G02916	AT4G28140.1	265	109	7	49	299	39	269	40.75	3e-40	162
AfisC8G02916	AT1G36060.1	86	26	0	154	239	136	221	69.77	1e-30	130

Ortholog group

Species	Genes
Allium cepa	g12361.t1
Allium fistulosum	AfisC8G02916
Allium sativum	Asa1G02354.1
Arabidopsis thaliana	AT2G20880.1; AT4G28140.1
Oryza sativa	LOC_Os02g42585.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	161	210	46.6	2.6e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005730	C	nucleolus
GO:0009414	P	response to water deprivation
GO:0009611	P	response to wounding
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009737	P	response to abscisic acid
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009873	P	ethylene-activated signaling pathway
GO:0010017	P	red or far-red light signaling pathway
GO:0010143	P	cutin biosynthetic process
GO:0010166	P	wax metabolic process
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0034059	P	response to anoxia
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0045595	P	regulation of cell differentiation
GO:0048825	P	cotyledon development
GO:0071472	P	cellular response to salt stress
GO:0071497	P	cellular response to freezing

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network