result

Gene information

Detail information of AfisC8G02933

Location

Gene	Chr	Start	End	Strand
AfisC8G02933	chr8	561134310	561137213	-

Sequences

CDS

Protein

Gene

>AfisC8G02933
CACACTTCCATGCTTTTCCCAAAATTTACATAAAAAATATAACAAAATGGCGAGTGCTGCTGCACCGGATTCAAACCGCAACGTAGGGGAAAAAGCACCTGGCAAAGACCGCCACAAAAAGTTGAACGGCCGGGGCTGCCGCATCCGCATGCCGGTCATCTGCGCTTCGCGGCTGTTTCAGCTGACGCGCGAGCTCGGTCACAAGTCCGATGGTCATACCATCGCCTGGCTGCTCCGAAATGCCCATGATTCTCCGACTGTAAGTTTTTTCTTACGGTCTGATTAGAGGATTAGCAATCGACATATGGCGTCGTTATTATTGTAAGTAATTGTTTTACATCATTCGGTAGCAGAACAGCATTTGCATTTTACTTGTAGTTGGAACTACCGCTTCTTTTATACCCTTTGATTTGTGCATTGATAAAGACCAAAAGAAAAAAAAAAAAAGGGCATGTACTAACCTGAAAATAAAACCTATCCAAATTTGGATTTTGGAGTGCTTTACAGTGCCCTTAAAAAGTAAGTTTCAAAAGAAAATATTTAAAGAATATGCATCACTTAAACTTACTAGAAAAAGAAGGTAACGTTTGGCATCACTTAAACTTACTAGAAAAAGAAGGTAACGTTTGGTTAGAAAATAAGGTTATGTTTGGTTTACCGTTTTTAGTTTTGAGTTTTCGTCCATACAAAAATACGCACGACGCTTGTATATTATGAAAAATGACAATTTTAGAAAACGAATTTAACACACAAAATAGAAAACAACTTTTTTTCATTTTTCGTGTTTTGAGAAAAACGGAAGCACGAGCAACAATTCATCTTTCCGTCGTTCCTCCATCCACTTCGTGGTCCCCTCCAATCTTCCGTTCATCCCTTCCGACCTTCCTTCATTCTTTTCATATTTTGTAATTAATGTTGAAAACTCAAAACATAAAATACAAAATAAACCAAACGACCCCTAAGTTTTGTATTTTGCGTTTTTAAACGTCTATTTTAAGATGGAGACGGAGGAGGTGAAAAATGATCGATTCGATAAATATTTTTAACATATAAGATTGAAAATGATTTGCCAACATATTTGGCTGAGTAGTTTAGATACGAGATTGAAGGTCACAACTTTGTTCATCGAGATCGATACTTTTTGACATTAATGAGTCATGTTAAAAAAAAGATTGAAAATGATTTTTTCTTTTCCGCCTTTTAGGAAATATCAACAATCATATTCTTTTTGAAAATGCAAAACACAAAATGCATTTTCTAGCCAAACTTTACCGAAGCTTTTTCCCCAAATTTAAATGTGCCCATCTTCAAAATAGGTGCATTTTCAAAATGCACATTACCTGAAAGTAAAACCTATTTTTATAATAAATTTTGGTTCCATGGTTTTTCTGCAAGCCTGTTTCAGAATTTGTCCTAAAAATATAATGAAATTTAACACAAATATAGTTTACTCAATACCATCAATCTCTTTTTCACTCAGTTACATTATACCGAACAGATATGAAATTGAACGCACATGCACGGTCAAGCAAAGTCGATCCACTTCTCTTCCACTGGCAATCTACTGTGTATCGTGCAAACCATTCCCAGTCAAAGACAAAGCATTTCAAATTAAAGCAAATTTAAATAATAAAAACTTACTTAGATTTGTTTTTGGTTTGTCGATATCATCATTCATTGATTCCTATCAATTTGGGAGAGGGATTTAGAGTTACGGGTTTGATATTTTGAGAAAATTTTAAGTGTATCACAAAGATTAATTCTTGGTATAGGTAAATAATAATTTTGATGCTATACCATATAAGGGTAGCTGTAGCGAGAATCATTGTAGTTAATTTTTGAGCAGTGCAAAATGCACCACAATACGCACTCTAATTTACCCAGTTTTTTATTGGTGTTAACCGCCAACCATCGTTTCCAGCAAAGAGTGTCATCCGAAACCAAAAAAGAAAAAGAAAAAAAACACAATGAAATTTTCAAACGACATCATATAGCCTTAGTGTGCATGTAACTTAGCTTGTTGATTATTCAAGGGTTACAATTCAAAATAGATGATACTTAGCTTGTTGATAGCAGGTGCATTTTTGAATTATAGAGTTAACTTTGGCAAAAGAATTTTTGTACTCGTTTTATACAATGATATGAGCACGAACAATGTTAAAGTTCCAAGTTTAGAAATTGTCAAGTGTAAAGATATTACAAACAAATTTCATTGTGTGAGCTTAAGTTTTCATTTGAATTAATTCTAGACAATGGAGAAATCAGGTCCTCATTACTTCTTCAAAGTATTCATCCCACAACATTCACTGTATTCCATGGTACATAATTCTTTTCCATTTATATTAATTAGTATCATGAGTTTTCATTTGATGTATATTATGATTTTAACTTGGGTTTATTACATTTGTTTAATTAGATGATTCCACCGGCTTTTTGGAAGCACGTACAGTTGATAAATGGTAGAATGGTTTCTTTGAAAGATTCGAGTGGAAATATTTGGAAAATTAAGTTAATTAAAAAATCAGAAGATGAGTATACGTTTGAAGATGGTTGGAATAAATTTGTTGTAGATCATAGTTTAATCATGGGTGATTTTTTAGTGTTCTGCTATGATGGAATGTGCATGTTCAGAGTTTTTATGTTTGATTCTTCTTGTTGCGAGAAAAGGACTGTGGAATATGTAAAATTAGAAGTTGAGAGCAGTGAAAACAGAGAGGATGAGGTAGAAATGGAGGATGAAATGTAGATGGAAAGAGAACAAGGAGAGTTTTCATTGAGGTGAATGAAATGTAAAAATGGTTAAGAGTGGATATTAATGATCATCTGTAAGACATGAAACTGTAGATTTTAATCTTTTTTATTTAGAAAATGAGAGCGGTACTAGATTTTTATTGTGCGAATCAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246169.1	4.7e-25	B3 domain-containing protein Os11g0197600-like
Swissprot	Q9FTA2.1	2.1e-17	Protein CHE
trEMBL	A0A5P1E7H8	3.4e-25	B3 domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G08330.1	52.94	2e-19	92.8	AtTCP11;TCP11	TCP family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02933	AT5G08330.1	85	38	1	12	94	24	108	52.94	2e-19	92.8
AfisC8G02933	AT5G23280.1	57	16	0	13	69	33	89	71.93	2e-19	92.0
AfisC8G02933	AT2G45680.1	67	26	0	3	69	59	125	61.19	2e-18	89.4

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	19	69	68.5	8.2e-19
PF02362.18	B3	Family	81	165	61.4	5.2e-17

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0001047	F	core promoter binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009653	P	anatomical structure morphogenesis
GO:0007623	P	circadian rhythm
GO:0008283	P	cell proliferation
GO:0008361	P	regulation of cell size
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0010029	P	regulation of seed germination
GO:0010229	P	inflorescence development
GO:0010252	P	auxin homeostasis
GO:0031347	P	regulation of defense response
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0042023	P	DNA endoreduplication
GO:0048364	P	root development
GO:0048467	P	gynoecium development
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:1900056	P	negative regulation of leaf senescence

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16221	TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION)	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network