result

Gene information

Detail information of AfisC8G02960

Location

Gene	Chr	Start	End	Strand
AfisC8G02960	chr8	565874466	565876140	-

Sequences

CDS

Protein

Gene

>AfisC8G02960
GGGAATTGAAGGAGTGGCAGCAATGTTTGCAGAAACCATGGCGGCGTTGCAGAAGCTCTAATTCCAGCTCTTAAATTCCCTCTTCAATCCCTTCAGAAAAAAACAACAACAAAAACATCTTAATTCTCCAGAGAAAAACAATTCAAGAAGGCAGAAAGAGAATAAAAGGAAAAAAGAAAATCACCAAAAAAGGAGAAAGCAAGAAAGCAACAATTGCAGGTAGCAGACAACTGTTCCCTTCTGCTTCTACTTCTGCTTCTGCCGCCTCTTTCTGCATAACTTACTTAAAATAACACCCAAGCTTTTCAATTCCAATATCAGCATGTTTCTACAAATTCAGCATGGTTTCTCATCACAACTGTAACTGAGGTATCTTTACCATTTATATCCATTCATTCCTCAACCTAATTATTTATATATATTCAACTAAACACCACTCGCTACACAGATCTGTATGCACTGGTAATGGATCATCTGAAATGGCGGGCTTCTCTCTAGGCGGCGGCGGCAGCACTCGTAGAAACACCGACGAAGAAGATCAGATCGCACCCGAAAACTTATTCATCTACAGCTCGTCCACGAACCCCAGTTCTTCAAACCGAGGTTTCGAGCTATGGCAGCATCAAGAAATTGCTCGACAGCACCACCAATTCTACTCATCCGCACCCACTATGCTCGCCTTCTCCTCTGACGACCACCACCCGCATAATATGGCCGGACCCAGCGGCGGCGGCGGTGTAAATAGAAGAGGGAGCTCTTCTACGAGCGGAGGTATGAGCTGCCAAGACTGTGGTAATCAGGCCAAGAAAGACTGTTCACATATGAGGTGCAGAACTTGCTGTAAAAGCCGTGGCTTTCCTTGCCCTACTCATGTTAAAAGCACTTGGGTGCCTGCCTCTAGACGCCGTGAGCGCCAGCAGCAGCTTGCCCTAACCAGCCACGATCATCACCAACATCAACAGGAGCAGCAGCAGCAGCAGCAAAGTAGAGACATTTTATCAAAGAGACCTCGAGAAATTACTACTCGCCTTCCTGGCACCTCTTTGGCCAACACCGGATTAGGTAAATTTTATGCCTTTTTCTTTGGAGATTTGTTCATAAACCCTAAAAAAATGTTTGCGGCAGGGATGGAAGCGGTGAGCTTTCCGGCGGAGGTGAGCTCACCAGCGGTGTTCAGATGCGTGAGAGTGAGCCAGATGGACGAAGGAGAAGATGAATATGCTTACCAAACAGCAGTGAATATAGGAGGGCATTTGTTTAGAGGAATATTGTATGATCAAGGTCCGGAACAAGTAATTCGTGGAGAGTCGTCATCTACTGCAGCTGCTGTGCCTACCGTGGCAGCCATTACTTCTGAGGTAATGACTTCTGGTACTGGAAATGTAGCGGGTTCGGGTGTAATGGTGGATCCGAGTTCGGTGTACCCGACTCCGTTGAATGCGTTTATAGCGGGTACCCAGTTCTTTCCTCATCATGATCCAAGGTCTTAATTTTATTACCACCAATTGAGGGGCATTTTAGGGTAAGATATCTTATTAGGTATGATTTTAGTAGCAAAGTTAACTCTTGTTGTTGATGATAGTTAATTTCTTGTTTTTTATTTAGTAGCATTTTAGTGTAACTTGACTTGAAGGTATCACTCAAGCAAATTGTAGTGCTGCATTGCTTAATGATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010918973.1	6.4e-53	protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0.1	2.2e-42	Protein SHORT INTERNODES
trEMBL	A0A8T3AT82	8.4e-55	Protein SHI RELATED SEQUENCE 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G75520.1	41.44	3e-59	225	SRS5	SHI-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02960	AT1G75520.1	362	137	14	1	308	1	341	41.44	3e-59	225
AfisC8G02960	AT3G51060.1	320	127	10	37	315	60	370	44.69	3e-59	225
AfisC8G02960	AT5G66350.1	349	129	17	1	308	1	326	44.70	3e-56	215

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF05142.9	DUF702	Family	98	249	223.9	1e-66

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0046983	F	protein dimerization activity
GO:0009299	P	mRNA transcription
GO:0009734	P	auxin-activated signaling pathway
GO:0009851	P	auxin biosynthetic process
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0010051	P	xylem and phloem pattern formation
GO:0010252	P	auxin homeostasis
GO:0048479	P	style development
GO:0048480	P	stigma development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network