result

Gene information

Detail information of AfisC8G03057

Location

Gene	Chr	Start	End	Strand
AfisC8G03057	chr8	581505951	581507377	-

Sequences

CDS

Protein

Gene

>AfisC8G03057
ATGCAAGGCTGCAGTAACAATAGCAATGGAGGCAGTGCAATGAGAAAAGGGCCATGGATGGCAGAAGAAGACGAAATATTATTGGAGTACGTCCGCAAACATGGACCGCGCGATTGGAGCTCCATTCGATCCAAAGGTCTTCTCCCTCGCACTGGCAAATCCTGCCGCCTTCGTTGGGTTAATAAACTCAAGCCTGATCTCAAAACGTACTTCTCCTCCCTCTTCTCTTTTCATTTGCCATTGAAAATGTTCTAATTGCCCTAATTCTCTCACTTTTGGAATACTGTTTTCCTTTTAAGTGTATTTCAGTATGAATTTAACTTAGTGAACTTGGCATTTCACTGTTTTTCCATTGATGGAGTAGTACTATATTATGTTCATGAGGCAGTATGTTATAAGCTTTGTAATAATAGTACATGACTATTTAATAAGAAATTCCTAGGCTTAAAAAGAAATGTTCCACTTAGTTGTAAATTAAAGAGAGTCTTTTCATAGGAGTAACATTTTTAGTATACGCTGATTGGATTACATGCAAGTATGTTACTTAAGATAGTATGGTCTTTCTGATTGGATCCTCTGTCTGCATATATGTAATGTTTTCACTGAATAAACTGTTGCTGTTACTTGTCTGAAACTTACATATAATGAAAGTGGATGCAAGTTTTCACAAGAGGAGGAGAGAATAGTGATAGACCTGCAGGCAAAATTCGGAAACAAATGGGCAAGAATTGCTACATATTTACCTGGAAGAACAGACAACGACGTGAAGAATTTCTGGAGCACAAGGCAAAAAAGGATGGCAAGACAAAATAATAACAACAGCCATGGCCATACTTCTTCTTCTAGGTCAAAAAAGAATCACCTCCAACTTGCCACGTCGTCTTCTTTCGCCCCTCAACCCCCTACTTTTGAGGTACTCTTAACTTTTAAGTACTTTTTATGATATCGACATGATTATAAGCTTTTTGAATGATGAATCGTGTATATCTGTGTATAAGTTTCAGGTAAAATGCTTGGATATAGTTCCATATGAAGAGTCATCATCTTGCAACTTCGACTGCAGTCAAAACTACTACGTAGAAGATCGAGATTTTAGAGTTGAGAACTTCGATCAAAGTCAAACTTCACTGCAATCGCAGGAGAACATGAATGGTCCGATATTGGAACCTTCGTTAGTTTGGGAGCATTATCCACATCCGACTTCGGATTTTCTAGTTGACTTTGGTGCTGATGACTTGACTTTTCCCGAGCCTTTTAACTGTGTTCCGTACGTTGACTTTGGAGTTGGGAACAGTAAGATTGGTTCGGTGAAGATGGAAGATGATTCTGGAATTTTCTTGGATGATTTTCCGGTTGAAATGTTTGATGAGTTGGAGAAGTCCATGCAGCAGCCAACTTCTTCTTCTGCTGCTGCAGCAGCATGGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK56359.1	8.1e-66	uncharacterized protein A4U43_C10F7610
Swissprot	Q0JB89.1	7.6e-53	Probable transcription factor MYB58
trEMBL	A0A5P1E1Q9	5.8e-66	Transcription factor DUO1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G60460.1	40.48	6e-51	197	DUO1	myb-like HTH transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G03057	AT3G60460.1	289	146	5	14	280	8	292	40.48	6e-51	197
AfisC8G03057	AT5G55020.1	114	49	1	8	121	20	132	56.14	4e-36	148
AfisC8G03057	AT2G32460.1	110	45	1	11	120	15	123	58.18	7e-36	147

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	16	61	47.7	1.2e-12
PF00249.28	Myb_DNA-binding	Domain	72	112	48.5	6.3e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009723	P	response to ethylene
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009860	P	pollen tube growth
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042335	P	cuticle development
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045926	P	negative regulation of growth
GO:0048235	P	pollen sperm cell differentiation
GO:0080086	P	stamen filament development
GO:0080091	P	regulation of raffinose metabolic process
GO:0090406	C	pollen tube

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network