result

Gene information

Detail information of AfisC8G03138

Location

Gene	Chr	Start	End	Strand
AfisC8G03138	chr8	595917078	595920149	-

Sequences

CDS

Protein

Gene

>AfisC8G03138
ATGAAGTTTATCTCAAACGGAGTGAGGTACGATTGCATAGAGTAAAAATTTGGTCAAGCATCTAGTAGTTAGCCTAGTTTGTTTTTGAAAATTGGTAACTGCAGTTCTTCCTTATCTATCAATCCATCATCAATCTTAGGAATACAAAATTTTTTAAACAGTTAGCAGACTGTTCTATTTCATTGTAGGAAAAAACTGTTAGTGGAGCTAACCTTGTTATCGAGCAGCTGCATATTGAATCCAAAAACATCATTGCTTTTTAGATTGATGGAGTCTCACAGCCTGGCAACCCGAACTCGAATTGTTGCTCCAACCCTATCAACAGTAAGTGATTCTATGGGTGAGTATATAATATCCATGATTAGAAAAGGTTGAACAAAAATAATGATTTAGCTAGGTAACAGTTGGCTGCTAGGTTATATAAGAATGTAGATGTAATATCTGGTGATCTTTGGTAATCTTTTGAAATAATCGGTACGGGATGTATATTTTTTCTCTCGATAGAAGATATTTTCAATGTATACATGTTTCACTCATCCCTCTCATAATATTTCGAAACCTAAGGCCCCGTTTGGCTTGTCGTTTTTAGTTTTGTGTTTTCGTCTATACAAAAGCGCGTATGTTGTATGTATTGTTGAAAAACAAATAATTTTGAAAAATGGAATTAACATGTAAAATAGAAAACAAGTTTATTTTGTTTTTCGTGTTTCGAGAGATAACAAAAGCACGAAGAACAATCCGACTCATTCGTTGTCTGTTGGTCGTCGCAATGGCTAAGAATTATAAATCTTTTTCTCTTATTTTTTGCTATTTCTTAGTGCAAGTTGAAAACACAAAACTCAAAATACAAAATGAAACCAAACGGGCCCTAATATTTTGAGGCTAAAATCTGTTTTGTTGTTCCATGTCCAATAGTCAGATGCTGCTTGAATGTTTAGTTCCACTTGATTTACCATTTTGCTTATTTCTATAGTTGCTGATAGAAAAATTCAGTTTAATAAGTGGTTTCGTATAATTGAATTTACTTTAAATTGTGAATATGTTGCTGAATATCTCCATTGAAAAATTCAATGTAATTATTAATGGCTTCTAGCTCAATCTTTTCATTAGTTTCCATTGTTGAGTAATTAATGATTAGATTTAGTTATTGTATCTCTCATGGGCATCCTTGCATAAAAAACCTGAATTTTAACCACCATCTAATAACCAATAAACTTTAGATTGCTCTTGCAATTCCGGTAATGAATCTGAAGTTGAATGTGTAACTATGAACTAGCTCCTACCATTTTGTTATAAACTTGTACATCGGTTGGATTGGTGTCTGCCAATAAAAGCATGTCATTTAATTCCTCTTCTAGTTTCGTAACAGTGATACTATCTATTTCCTATCTGTTTGTTCCAATGCTTCAATTCAATTTTAGTTGCTTTAAGTTGAATACATGATTGTGTGAATGATCACCCCAAGTGGTTTGATTCATTCCTCTTGTTACAACAATATTCTTGTTTAGCATAAGGTTGATGTTCCTGATATCCAAGTTACTTCCGTTGCCCCCACCAAATGTGCCCATGCTAACTGACAGTCCGCCACTACCTTATGCTGCTCCAGTTATCAGTCACCCTGTTGATCCCCCACTTACCATTGATTCCTCTAGTCCTAAAAATATAAGTATAGTCATTATATATGAATTTTATAAATACTTATCTTGTTAAACCATTGCAGTGATCCATGTGCACAAGATAAGAATACCTTGATGGACTCTGTTCTAAAAACAAGCGGAGTGTTTGGTGATGAAAACAAAGAAGTGGTTCTATTTGGAAAGATAGTGTGTGCTTTCAGACCAGGTTACTGTGCCTTCCAATCAAATCCTTGGACTATAATTATTGTTATTTGTACGTATGTTGTACATTGACTTCATTTAGTTGTAGCTTTCTAATATGATAATCTATTTTAACAGAGTTGGTTAATGCAAGAGTTGATAGGAAAGGTGGAATCGATCAGAAGCCTACAACTCCAAGGTCAAAACATTCGGCTACTGAACAGAGAAGGAGAAGTAAAATTAATGACAGGCAAGTATAAAACTCATAGGTTAAATCAATACAATAGTACTCTTCGTATCTTCGTTTGATTATGATTAGCATTTTTGAATCTTTTGAATGTCTTTATATATAATGGATGTAGGTTTCAGATGCTTAGAGATATCATACCGAACAACGATCAGAAGAGGGACAAGGCATCATTCCTTTTGGAGGTTGTGTTTTTTACAAATTTTTTAAAATTAAAATCAGATTGTTTCAGATATCTCTCTAATTTGCGTTAATGTTACAAGTTATAGAGTACATTCGGTTCCTTCAGGAAAAGGTTGAAAAATATGAACCTTCATGCTCTGGTTGGATGGAAGAAACTAAGAAATTAACACCATGGGTAATCTCTTATTATACATTCTCATGTGCTAGAAATGTTTTGTTTATTTTCCAAACTTTAGGCATTCATGATATATGTATAGTCATTATATATGTATTCAATTATACAATATTTTTCTCATTTTTCCTTTTGTGTGGTAGCGTGTGTGTGTATTCAGTTATGAGTATAAACTTTTGTTATTGTAATTTTTCAGTCTTGCATTAGAGTAGCCATGGACTTTGTTTCTCCTGAGAGTCTCATTCAATGTGTCAGTTTAACTGAAGAGTTTCGACTGCTTCCAAAAACTCATAGGGCAAAGGAAGACAAATTAGAGGTACATATTGTTTTCAGTTAATGTATTTAGAAAAAAAAGAAAAGAAAATCATTTCTCGCTTAAGTTAGCAACTTCATCTGCATTTCTCTCTGTGATCATGTATACTTATGAACTAAAGATCTTATTATTTTTCTTGGTTTATAACTCTATGCCCGGATTAGTTAGCTTCACATGATGTAGAAACTAACCTGACAGCTGTTCCATATTTTGTATGCAGGTAAAGAAAATGTCTATATATTCAATGCAAGAAGCTGTGAAAGAAGCTAAAAAGTTGATATCCTCTATCAGGTTAGACTGGTGTATTTACAAGTTACTGAACAATGCTTCTGTCAAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274646.1	1.4e-18	transcription factor BIM2-like isoform X1
Swissprot	Q9LEZ3.2	3.4e-14	bHLH transcription factor bHLH046
trEMBL	A0A5P1FMM8	9.9e-19	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G08130.1	87.76	1e-17	86.3	BIM1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G03138	AT5G08130.3	49	5	1	63	110	151	199	87.76	1e-17	86.3
AfisC8G03138	AT5G08130.1	49	5	1	63	110	151	199	87.76	1e-17	86.3
AfisC8G03138	AT5G08130.4	49	5	1	63	110	271	319	87.76	2e-17	85.9

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	70	107	27.2	2.5e-06

Gene Ontology

Accession	Ontology	Name
GO:0000785	C	chromatin
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0055114	P	oxidation-reduction process
GO:0046983	F	protein dimerization activity
GO:0008168	F	methyltransferase activity
GO:0009555	P	pollen development
GO:0009908	P	flower development
GO:0031490	F	chromatin DNA binding
GO:0032454	F	histone demethylase activity (H3-K9 specific)
GO:0032776	P	DNA methylation on cytosine
GO:0033169	P	histone H3-K9 demethylation
GO:0048366	P	leaf development
GO:0051213	F	dioxygenase activity
GO:0060969	P	negative regulation of gene silencing
GO:0070919	P	production of siRNA involved in chromatin silencing by small RNA
GO:0080188	P	RNA-directed DNA methylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network