result

Gene information

Detail information of AfisC8G03402

Location

Gene	Chr	Start	End	Strand
AfisC8G03402	chr8	634968829	634973766	-

Sequences

CDS

>AfisC8G03402
ATGTCTGGCAGGAGACGAAGTATGACAGGCACGCCATCTCCATCTCCCGGTGCAGGTGGTAGTGGCACTGCACCGGACTTACGTCCGATGGCAGAAGTTGTTCCGAAAAGTGCCGGGGGCTTTGAGGACGACATCCCCCCTCATGTCAAGAACGCAATACAGGCCGATTTACTTGCTGTAGTCCGCATTGACCCTGACGACATGGACGTTTTCTTAAATCACTGGAATAAAAGAATGAGGAAAAATTACAGGGATACATTGTCCAAGGCTAAGAATTCAGGCAAAAAGCCGAACTGGATGGGTGACGGTGTATGGACTGATCTTCTTCGGCTTTGGGACACTCCGGCAGCAAAAGCTACGAGATACAACCGCGAGCCCACTATGGCCGAGTTGTTCATGGTGACGCATGCCGTGGAGAGGACTGATGAAGAAGGCAATGTTTCGTACGAGTGGACGGATGAAAAATCCCAATCCGTAATGGCGATGAGATCGCAGAGTGCATACAGGAGGTCCCAGGATTATGGTCACCAGACCGAAGATCAAAAGTTAAGAGATTATGTCTTAAATTATGGCCATGCCTCCTGGGCTTCTGTTGCTACTAATGCAGGGTTGCAAAGAAATGGAAAGAGTTGCAGGTTAAGATGGATCAACTATTTGAGACCTGGACTGAAACATGGCAGCTTTTCTGTAGAAGAAGAGCAAACAATTATTCGCCTTCATGATATTCTAGGAAACAAGTGGTCGCAGATAGCAATGCAACTACCAGGAAGGACAGACAATGAAATAAAGAATTACTGGAATTCCTACTTAAAGAAGAAAACCAGCCCTGCAGTTAGCACTGTTCAAGATGTATTATCATCGTCATCCTCCTCCTCTTTGTCATCGATGAATTTGCAAACTTCTGCAGTGTTTCCGAAAGTTATGTTTGCGGATTGGATGCCTAGTGAGCATAATAGTGACAATGCAATGCTAAACTATGGTTTGGAGAAAGATGATCAGGCTGTTAAGGATCATGTAGAAACTAATGAAGGGTTTTTTCAGGGGTTTGTAGATGATAACATTTGCCAAGATTTTCATTTTGGGTATGAAGATATTCTACAGGATGAGATTTTCGATCTTTttCGCCTTAGAAATGTAAACTGA

Protein

Gene

>AfisC8G03402
ATGTCTGGCAGGAGACGAAGTATGACAGGCACGCCATCTCCATCTCCCGGTGCAGGTGGTAGTGGCACTGCACCGGACTTACGTCCGATGGCAGAAGTTGTTCCGAAAAGTGCCGGGTAAGTATCAATTTTATTTAAAGTGTAAGTTTTAAAATCCACTAAACATGTATATTATAACTTTTGCAGGGGCTTTGAGGTGGAGCCATCAGATTATATTCTACAAGTTTCGAGGAAGGCTTTTCAGAGCcGAATGGATGGTTGTTGGCCTCGCTAGGACGACATCCCCCCTCATGTCAAGAACGCAATACAGGCCGATTTACTTGTAAGTAGTAGTTTGAATTTCAGTTGTAAATTAATATATTCTATATAACTTAAAATAATTTCAATTTACAGGCTGTAGTCCGCATTGACCCTGACGACATGGACGTTTTCTTAAATCACTGGAATAAAAGAATGAGGAAAAATTACAGGGATACATTGTCCAAGGCTAAGAATTCAGGCAAAAAGCCGAACTGGATGGGTGACGGTGTATGGACTGATCTTCTTCGGCTTTGGGACACTCCGGCAGCAAAAGTAAGTAATATATGTTTGCTTTGTTATTTAAATCTAATATAAGTCTCGCAAGATATATACGTgtTAATTTATCTTAATTTGTAGGAATTATCTGCACGGAACCGGGCTAACAGAAATAAAAATCCTGCATTGCACCGTGGTGGCTCCAAATCCTTCTAGGAGCATAAGAGAGAGCTGATAATTAAATTTATAAACTGTGTTTACATTTTATTAAAATATTTTATATTCAGATTAGCAATAATATTTATATATTTTCAGGCTACGAGATACAACCGCGAGCCCACTATGGCCGAGTTGTTCATGGTGACGCATGCCGTGGAGAGGACTGATGAAGAAGGCAATGTTTCGTACGAGTGGACGGATGAAAAATCCCAATCCGTAATGGTAAACTTATTTATTGTTAATAACAATATTTTGTCTTATTTTATTTTCAAAACTTGAAATTCGGTTTTTATCGTGTAAAACAATTGTTTGTAATCGTAGGAGAGGTACGAAGCTGAGCGGACTCGGGTAGCACAGTCCATTGGTCGGGAAGAGCTTACGCTAGAGGAGGCGAACAATATCTGGGATGCTATTATTGACCCGCCTTCTCGAACCAATGTGCGGTATAGCTATGGAAATCTGAAGGTAAATTTTGACATGTACTAATATATAAATTTACACGTGCATATGAATAGTTAAATAATATTAATAATATTATATATATATACTAATATATAAATAATTATGAACTATTTTACAGGCGATGAGATCGCAGAGTGCATACAGGAGGTCCCAGTAAGAAGAGGATATTGCTCAGTTGAAGAAAACAGTGGATGAAATAAATGATTGGAGGAAGAGTTTTTTTAGAGCAACAGCTGGATGAGCGGATTGCATGTTATTTGCAACAGCATGGGAGGATGCCTGGAGAGGATGGCAGCGATGGCGAGGAATAGGTATGCTTGTTTGCTCATTCCTTAGTTTGGTATATACACATTTTGGTTGGTTTTGTGTATATATATTTCGGGATATTATGTACATATTTTGATGGTTTGTAGTTGTGGTTGGAAAACTGTGTACACATTTTGGTTGGGAAACTATGTACATATTTTGATGACTTGTATTGGTTGACATGATATGTATTGTGTTGTTGGGATTGTATATGATTTTGTTTGGTTTTGTTGGATTTTATATTGTTTGAATGTATaGTGATGTTATATGATGAATATATGATGGTTATAGTTGATGAATATAGTGTATATTGGCTGTGATGATGGTATTTGATGGTCGTTGTTTGAAGTGTATATGGGCTGTGCAAGTGCACAAATTTTAGTTCAGTATAGCGACGGCTAGCGACGGCCAGCGACGGCTAGCGACGGCCGGCGACGGCTAAAAGCCGTCGCTATCTAGTGTCGTCCTTGTAGTGATGGTGCTCAGTCAGATATCAGATGTGAAAGCTGGTCCGGTGATTCTATATATTAATAACAGATCAGCAATTGATTTGGCAAAAAACCCAGTTTTTCATGGTCGAAGTAAGCACATAGACGTACGCTATCATTTCATCCGAGAGTGTGTTGAACAAGGATCGATTGTCATTAAGCATGTGGGTACATACGAGCAGCGAGCGGATATTTTAACAAAGGCTTTGTCCACTGTTAAATTCGAGAAAATGCGCAAACTGTTGGGAGTCAAAGATCTTCACTAAGTTTAGATTAAGGGGGAGCATGTTGGAATATTAATCTAAATGTATTTGTTTTTATTTGAATAAATCAACTGTGACTGGCTATTAGTTGCAGTAAGAATAGGTAGTTGAGTTGAAGTGGAATAAGGAGTGGAGAAATATGAGGAGGTGATCCTGGTTTTTAGTTGTCAACTTAGGTGATCAGCTTAGTTTAAATTTGATTTTTTTATATTTAGTTTCAATTATCTCAGTATTGTTTTATTCCACTCAGTAATCAAATACAAACCAGCTTGTTCATTCTTGTGTATTTATCTACAATTTTGATTCATATGTAATAATCACCGTAATTCTTAGTCAACTCAATCTAATTAATGGCTAAATACATAACTATAACCAATGCATAATCTATGTTTAATGCATGAATAAATTATTAAAATAATCTACACCAACTACATATCCTTGTGAATTACCTGAAATATGTGTTGTGGGTTCGGTACATACTTCCTTAGAGTTTACAAGCAAAACTTGATTCTCTAGGTCTTTATATATATATATATATATATATATATATATATATATATATATATATATATCAAAATAACTCATATATTGATGTATGTACATTGACATTCTTTTAAGAACTATGAAGAATATTcTATTATATATATATATATATATATATATATATATATATATATATCAAAATAACTCATATATTGATGTATGTACATTGACATTCTTTTAAGAACTATGAAGAATATTCATATTTTGATTACGTCGTGACTTTTAACGCATTAATAAATGTGTGGAAAGTTTATTTTCCAACAATTTATACATGAAAATTCATTCAAACTTAGCCATGTACGAACAATATATATAAAAGAAAAATTGATTAATTATCACTGTTAATTAACTTCCAAAAACAAAACTGATGTAAGCCTCTTGCAAAAATAGTACACATATAATATGAGATCATGAGAACTTTCGGATATAAAAAAATAGGTTAAAGAGGACAATTATTATTATTATTGCAGTGTATTATATATATTAGGTGGAAACACAAGCTTATATAGTAAGAGGTGTTATCAAATAAGGACGAAGTTGACTTAGCAGAATAATATAGTAATAAGGTGATGAGGATCGTGGGGTCTTTCTTATATAGCATATGCGTCCTTTTTCTTTGCTTCATAAGTATATATGAATTTATGATGAAATGATGATATTTGAATCTACCTAGTTCATTAGCAAATGATTGCTAGTTGATGTACTCTTATTCATATTTTAAAGTCCAAAACATAACAATTGGCCAAAATAGAATGTCAATGAACTGATAGTTATATATTTCTTTTGGTCGGTCTTGCTGCCAACTGTCCTTTAAAATATGCATTGTGCAAAATCTACTCACTCGTTTTTTTCAAATAAATTTTAACCTTAAACAGTTTGAGATTCATTTCACTGAATATATTTAACCATGTAGTTTCAGTTTCAGTTCAGAGTTTTGCCAGTAACTTGACCTGTTGCTATCCTAATATAAAGTTTCATGGAATTAAAATGCATATCATGTAATTTATTACTAAGAATGTTATATTTGCACAGTAAGAAGCCTGGCTTGTTTGTTAACACAAGATATAATTTTCTAATTCAATGAAAGAATCTTTGAATTGATTTTGTAGCCAATGTTATATTCGTTTTCTTTTTCAGAAAAACAACATTATTTAAATCTTCGATAAGCAAATGAGTGCTTAAGAACCAAGATGGTTAGTAATTAACTTGCTATAAATGTCCAAACCATATCATACATGtaCATATCAGTTGAATAAAATAAAAATGGGTTGCAAGAACTGCGTGAAAAAGAAAAGCGTGACTAATAGAAAGGGATTATGGTCACCAGACCGAAGATCAAAAGTTAAGAGATTATGTCTTAAATTATGGCCATGCCTCCTGGGCTTCTGTTGCTACTAATGCAGGTATAGATTTTCTCCCTTGTTcATTTTCTTTCAAAATCAGTTATATACTGCACTTGACCTTTAAACTCATAGATAGTATAAAACtATGTGTTTTATTTTAGGGTTGCAAAGAAATGGAAAGAGTTGCAGGTTAAGATGGATCAACTATTTGAGACCTGGACTGAAACATGGCAGCTTTTCTGTAGAAGAAGAGCAAACAATTATTCGCCTTCATGATATTCTAGGAAACAAGTATGCACTTCGTATTATATATTTTTTTTCTTTTTTTTTTCTTGTTTATTTGTTGTTTATATAACCTGCCTATAAATCATAATATGATTTCATCATCAATAGGTGGTCGCAGATAGCAATGCAACTACCAGGAAGGACAGACAATGAAATAAAGAATTACTGGAATTCCTACTTAAAGAAGAAAACCAGCCCTGCAGTTAGCACTGTTCAAGATGTATTATCATCGTCATCCTCCTCCTCTTTGTCATCGATGAATTTGCAAACTTCTGCAGTGTTTCCGAAAGTTATGTTTGCGGATTGGATGCCTAGTGAGCATAATAGTGACAATGCAATGCTAAACTATGGTTTGGAGAAAGATGATCAGGCTGTTAAGGATCATGTAGAAACTAATGAAGGGTTTTTTCAGGGGTTTGTAGATGATAACATTTGCCAAGATTTTCATTTTGGGTATGAAGATATTCTACAGGATGAGATTTTCGATCTTTttCGCCTTAGAAATGTAAACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263873.1	2.0e-45	transcription factor LAF1-like
Swissprot	Q9M0K4.2	3.7e-36	Protein LONG AFTER FAR-RED LIGHT 1
trEMBL	A0A5P1F3V0	1.5e-45	Transcription factor LAF1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G48920.1	42.33	4e-38	155	AtMYB45;MYB45	myb domain protein 45

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G03402	AT3G48920.1	215	95	4	179	370	27	235	42.33	4e-38	155
AfisC8G03402	AT5G52260.1	130	43	2	179	303	21	150	63.08	6e-38	155
AfisC8G03402	AT4G25560.1	95	27	0	179	273	19	113	71.58	2e-37	153

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	178	219	38.1	1.2e-09
PF00249.28	Myb_DNA-binding	Domain	226	270	52.8	3e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0001944	P	vasculature development
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0010089	P	xylem development
GO:0010091	P	trichome branching
GO:0010119	P	regulation of stomatal movement
GO:0010200	P	response to chitin
GO:0010214	P	seed coat development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:0048658	P	anther wall tapetum development
GO:0080091	P	regulation of raffinose metabolic process
GO:1901348	P	positive regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network