Gene information

Detail information of AfisC8G03425

Location

Gene	Chr	Start	End	Strand
AfisC8G03425	chr8	643720491	643721347	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008794566.1	1.8e-54	transcription factor LAF1-like
Swissprot	Q9M0K4.2	1.5e-42	Protein LONG AFTER FAR-RED LIGHT 1
trEMBL	A0A8B7C9S7	1.3e-54	transcription factor LAF1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G25560.1	70.19	1e-41	166	AtMYB18;LAF1;MYB18	myb domain protein 18

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G03425	AT5G52260.1	124	37	2	15	134	13	136	66.94	9e-42	166
AfisC8G03425	AT4G25560.1	104	31	0	14	117	10	113	70.19	1e-41	166
AfisC8G03425	AT4G01680.1	117	38	1	1	117	1	115	65.81	4e-41	164

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	16	63	49.6	2.9e-13
PF00249.28	Myb_DNA-binding	Domain	70	114	51.1	9.8e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001944	P	vasculature development
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009411	P	response to UV
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009809	P	lignin biosynthetic process
GO:0009901	P	anther dehiscence
GO:0010089	P	xylem development
GO:0010091	P	trichome branching
GO:0010119	P	regulation of stomatal movement
GO:0010214	P	seed coat development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:0048658	P	anther wall tapetum development
GO:1901348	P	positive regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network