result

Gene information

Detail information of AfisC8G03465

Location

Gene	Chr	Start	End	Strand
AfisC8G03465	chr8	649621271	649624488	-

Sequences

CDS

Protein

Gene

>AfisC8G03465
AAAAACCCTTGACACGTGTTCTATGATCCGTCCACTCATCCGTCGTTATAAACCCTCTCCACCGCCCTCTTCTTTCACGCTTCTCATTCTTAGGGTTAGGGTTTCAAAAAAATAATGTCTGAGGAGAAATCAACAGGAACGGTTAAGTGGTTTAATACCACCAAGGGCTTCGGTTTCATCACTCCTGATCAGGGAGGTGATGATCTTTTTGTCCATCAGTCTTCCATTAAAGCTGAAGGCTACCGTTCGCTGGCTGAAGGTGAATCTGTCGAGTTCACCATTTCCGAAGGTGACGACGGCCGCACGAAAGCTGTCGATGTTACCGGTCCAGGGGGTGAAAACGTGAAGGGCGACTCTGGTGGCGGACGTGGAGGCGGCGGTGGCGGCTATGGAGGCGGCAGCGGTGGTTACGGTGGCGGTGGCGGCAGTTATGGTGGCGGAGGCGGTTATGGTGGTGGAGGCGGCAGTTATGGTGGCGGTGGCGGTTATGGCGGGGGTGGAAGAAGTGGCGGCGGAGGTGGTGGTTGTTATACTTGTGGGGAATCTGGGCACATGGCTAGGGACTGTACTAGTGGAGGCGGCGGTGGTGGAAGATATGGTGGCGGCGGTGGCGGCGGCGGCCGTTACGGTGGTGGTGGTCGTTCAGGCGGCGGTGGCGGCGGTGGCGATGGCTGCTTCAAGTGCGGGGAGAGTGGGCACTTTGCAAGGGATTGTTCTTCTGCTAATTGATGGTGATGCTTTAATCTGTTATGCTTTATGCTTATGAAAAACTTATAGTTGGGTCAGACTTGGTGTTTCATGTTATGGATTTAAAAATGGTTTTTGAAATTTGGTTATCTGAGATTGAAATTAGATGGTTATTATTGCTTGTTTTTTGCTAGTATCATTTTACAATGTTATTTGTTGATCCGTGGTTTTAGTTTTTCTGTTCCGTGTATTTAAATCCTTTTGGGACTAGATTTTCGTACTTTAGATGTGTGAACGTTGAAGTTTTAGATTATCATAGTTAATAATATATCTTCTATAACAATGCATCGAACTGTAATTTTAGAAGTTTTGATTGAGTTTAGATCAAATTTTAATTGTAAACTTTTATCATAAATACAATACATGTAGCTTGTTTGTCAAATTAGGGAATTATCCTATTTATGGTACGTATCTACAATCAATCAAATTGATTTTCTTTGTGTGGCTCAAAAGTTAACACCTATCTTCTGTATGAAAGACTGAATGTTGATATTATTCTTTGTTGTTGTTCATCTTATTGCATACCCTTTCTGGATTTTTTTAATGTAGGTAATTTGCTTATGATTACCTAATTCATCAATAACTAGTTTTTAGCCATCACTACTATATTCTCAATAGTCTTTTTTTGTTTACATATTACTTAAATCAGAATTAAAGGGTTATCTGTTATATATACTATTCAAGTATCATTTTTATGATTTCATGGGAGATCATGCTTTGATAGAAATGATGTTATGGTAGGCCGAATTTAGCATATGCAATTTGCATTTCAGTTGGTTTAAATGTGAACTTACTCTTCAATTATGATTTTAAGTTTTCAAGTGCAACAGACTAAAATTCTTTGGCTAATATAGGTTTGAGATGTTTCTAGTTTTAACTATAGATTGTTTGATTACATATCATTTTAGTCCAGCATGTATTATTGGTTTCAATTTTGTTCTATTTGTGGGGGGTATGTATATTAACTTTTGAGTTATCACAATATTGAATTTGTCTAAGCTAACGTTTGCAGTGGAAAATTGATATTATCCTGTTATAAGTTTTTGTAACTTAGAAGAATATTTGTCTTTAATTAAACATTCAAGTCTTTCAAATTCATTACTTTGGTTAAGAAGTATTTATTTCAAAATGTCTTTACTTGAATATTATATATTTATCCATTGTCAATTTTGCAATAAAAATTCTGTAGCTGTTCTTGTTTGTTGGCTTAAAACAATATCAAGTGAGTAAAAACATTTTGGCATAATAATGAATATCAGTTTACATTTCAACTCTCTGAACTACTTTAATTACACAATACAACTTGCTAAATGCGTTTTGATTTTTAAACCTATTAGACTTATGGTTTAATGGTTATGGAATAAATGGTGTGTTATTTTGATTTTGACGCGTATTATAGTAGAGAGAAAGTAATCTCTTTTTTTGTTTAGAAATTACCTTGGGACAGTTGATCAGAGGTCTTCAACTTAAACTTTGTTTTCCCTTTTTTACAGTGGGTTAGAACTAATTTTAGCATGTGATATTTGACTCTTCTTCATAGATGGTGTTGCAATCGTTGATGGTTTAAATATGTAAATAGGATGAAGTAAATTAGAACAACATAGAAGAATATTATTAGAACTTCTATTTCAGCATTTGGTTACTGGCATTGGTCAATTTCTTTACTGTTCACAACATTTTAGTGAAGTGGAAAATTCAATGAGATTATTGTTTCAATTGAAACTAAGAGTTAAAATATCATGAGATTACTTCAATGTGATAAATGTGCCTAGGTTCTATCCTCTTTAGTCTATCCTTTTTTGGCTTAAAGTAGAGCAATTGATACAGTTTAATGTTTTCTAATATTGTTGCAATCTCGGAATCCGAGATTGTGCATAATGTAAATTGTATCAGTATAAAGAGAGTTTGCACTTTCAGTTCCTTTTCTTAAACTAAAGGAGGATAGAGTAAAAAATGGTAGAATCAAGTCATGGTGCGGTAATTTGCCGAGATGGTTCCGTATTATCATCTCTTTTAAATTCAAATCTGCACAGTTACATACTGTGTTTAGGTACTAGTTTTAGATAAATTAAATTCTTGCAGAGATTTTAATATAAATATCCAACTGTTAATACAGTATAATGTAATATAATGTAGTGGATAAATTTCAGCAAAAATTGGTTACTTATGTTTTGTTCATTTGGTTTGATTTTAGTAGCTCCTTTTTCTGAAATTTTTTACACCTTTATCAGGCATTCTCTACTTCTGGAAATTGCCTATTTTGTGGTGTGGAATTAATAATTTACTTTTCTGTACACTTGCTCACTTGGTTTGATTTTAGAGTGTGTTTGATTTGGTTACTGATGATTTTCCACAAATGCACTAAATACCTAATTTGCAATTTTGCAATTTTACAAATGTGATCGTAGTATTAATTTGCAATTTACCTTTAGTCTATCCTTTTTCCATGAGATTATTGTTTCTATTGTAAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_026395953.1	5.4e-29	glycine-rich protein 2-like
Swissprot	P27484.1	2.7e-25	Glycine-rich protein 2
trEMBL	A0A4Y7IBV0	3.9e-29	CSD domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36020.1	47.95	5e-36	147	AtCSP1;CSDP1;CSP1	cold shock domain protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G03465	AT4G36020.1	219	88	3	1	202	6	215	47.95	5e-36	147
AfisC8G03465	AT4G36020.1	67	16	1	137	203	254	298	43.28	1e-06	50.1
AfisC8G03465	AT2G21060.1	199	69	2	4	202	13	197	58.29	6e-32	134

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00313.19	CSD	Domain	7	71	91.3	2.2e-26
PF00098.20	zf-CCHC	Domain	137	153	33.0	3.7e-08
PF00098.20	zf-CCHC	Domain	186	201	31.6	9.7e-08

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0001072	F	transcription antitermination factor activity, RNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003697	F	single-stranded DNA binding
GO:0003727	F	single-stranded RNA binding
GO:0003729	F	mRNA binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005507	F	copper ion binding
GO:0005524	F	ATP binding
GO:0005730	C	nucleolus
GO:0005794	C	Golgi apparatus
GO:0008270	F	zinc ion binding
GO:0009269	P	response to desiccation
GO:0009631	P	cold acclimation
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009793	P	embryo development ending in seed dormancy
GO:0009826	P	unidimensional cell growth
GO:0009845	P	seed germination
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010501	P	RNA secondary structure unwinding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0031564	P	transcription antitermination
GO:0032508	P	DNA duplex unwinding
GO:0043457	P	regulation of cellular respiration
GO:0048443	P	stamen development
GO:0060567	P	negative regulation of DNA-templated transcription, termination

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K03704	cspA; cold shock protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network