result

Gene information

Detail information of AfisC8G03523

Location

Gene	Chr	Start	End	Strand
AfisC8G03523	chr8	660940944	660943288	+

Sequences

CDS

>AfisC8G03523
ATGGCAGCTTTCTTCAATGAATCTCATCATGAACTTCAACCCGAAACTATGCAGACTCTCTACTTAATGAATCCAAATTTCCAAATCTACTCTCAAATACCATACTTGCACAATCAACAGTTGAATGATATTCCAGGCATGCAGTTTACAGGTTTGATTAATTCTAAGTATTTGAAGCTTGCTCAGGAACTTCTAGATGAAGTTGTCAGTCTTGGTAGTGAATTCAAAGATGAATCCATGAAGGATTATGTTAATAAAGTGGTGCCTAATGAAGGAGTACACATAGACAAAAATGAGAAAGGATCaGGTGAGCTTACAATCGTAGAGAGGCAAGAGATTCAGATGAAGAAGGCCAAACTTGTGAATATGCTTGATGAGGTGATACATAGATACAAGCAGTATCATAACCAGATGCAGCAAGTCATGTCATCATTCGAAGCAGCAGCAGGGCCGAATTCAGCAAAAACATACACTGCACTAGCTTTAAGAACGATATCAAAACAGTTTCGAAGCTTGAAAGATGCAATAACAGGCCAAATACGTGCTGCTGCAAAAAGGTTAGGAGAGGAAGTGTCTAATGAAGGAGGGGGTAAGAGGAAAATTTCCAGACTTCAGTTTGTGGATCAGCAAGTGAGGCAGCAAAGAGCTCTTCAGCAGTTGGGAATGATGCAGCATAATGCTTGGAGACCTCAGAGAGGTTTGCCTGAACGCGCTGTTGCTGTTCTTCGTGCTTGGCTCTTTGAACACTTTCTCCACCCGTATCCTAAGGACACAGACAAGAAGATGCTTGCAAAGCAAACAGGTCTCACTAGGAGTCAGGTATCAAACTGGTTTATAAATGCACGTGTACGTCTATGGAAGCCAATGGTGGAAGAAATGTACAAGGAGGAGATGAAGGAGAACGAAAATAGCAACAACTCTGAGAAGGCTGACTTTTCAGAGGCTAATGAAGAGTTGATCAGTTCTAAATACAATGCACAACAAGAAATCAATGAAGAAAAGTTAGACAGTTTCTACTCACAGGCAAATCCAGTGACTGTTGCTGATTATGGCGTGAAGTTCGACAAAGAATCAATTAACGGAGTTCATGAAAACTCCATAAACGTAGGTGAATTCGTAGACTACTCTGTAGGAGGAATCGAAAGGTTTGGAATCGAACAATTTAACAATGTTTCACTTACACTTGGGCTAACAAATTATGAAAATTTATCGATACCTGGAGCACAACCTAGTTATATGTCGGACAATGGCATAGCATTCGAAACAAGAATTGATCATAGTAGTGCTGAAAACTATGGATTTTCCAATCTCAACAACAGTTCTATTGAGGGAAGTAAAAGGTTTGCTTCTCAGTTACTACCAGACTTTGTAGCGTAA

Protein

Gene

>AfisC8G03523
GAAAAACGTCTATTGTGATGTATATTTCAATACCCTGATAACAGAAAGTCTTCACCATATTTCTAGCTCTACATGAAAAAGGAAGATTCTTCTTTTGTGATAGAAAAATAAAGCATCCACCTAACGGACTCCCTCTTCTCATTCTCGAAACGTTTATTTTGTGTGTGTGTGCAGGAAAATCAAACCTCAACTACCTTAGTTGAGCAGCGGTTCAAAGATTTCAATCATGGCAGCTTTCTTCAATGAATCTCATCATGAACTTCAACCCGAAACTATGCAGACTCTCTACTTAATGAATCCAAATTTCCAAATCTACTCTCAAATACCATACTTGCACAATCAACAGTTGAATGATATTCCAGGCATGCAGTTTACAGGTTTGATTAATTCTAAGTATTTGAAGCTTGCTCAGGAACTTCTAGATGAAGTTGTCAGTCTTGGTAGTGAATTCAAAGATGAATCCATGAAGGATTATGTTAATAAAGTGGTGCCTAATGAAGGAGTACACATAGACAAAAATGAGAAAGGATCaGGTGAGCTTACAATCGTAGAGAGGCAAGAGATTCAGATGAAGAAGGCCAAACTTGTGAATATGCTTGATGAGGTACTCAAAACTTAGAATTACTTCTCAAATATCATATTATGTATATCAATTTATCAGCTTGTGTATACCTAAAATTGAAGGTGATACATAGATACAAGCAGTATCATAACCAGATGCAGCAAGTCATGTCATCATTCGAAGCAGCAGCAGGGCCGAATTCAGCAAAAACATACACTGCACTAGCTTTAAGAACGATATCAAAACAGTTTCGAAGCTTGAAAGATGCAATAACAGGCCAAATACGTGCTGCTGCAAAAAGGTTAGGAGAGGAAGTGTCTAATGAAGGAGGGGGTAAGAGGAAAATTTCCAGACTTCAGTTTGTGGATCAGCAAGTGAGGCAGCAAAGAGCTCTTCAGCAGTTGGGAATGATGCAGCATAATGCTTGGAGACCTCAGAGAGGTTTGCCTGAACGCGCTGTTGCTGTTCTTCGTGCTTGGCTCTTTGAACACTTTCTCCACCCGTAAGTGTAGCTATATACACAGATTCATAACTGTATCATGGTAGAAATTCATGAGATATTAAATCATGTCCAGATTGATCGATGTCACCAGTGGTACACATTCATTATTCATGTATATAAAAGCATTTATTAGTTTGTTAAGTTGAGGGATACTTAATAATCCATGTAAAATGGCAGGTATCCTAAGGACACAGACAAGAAGATGCTTGCAAAGCAAACAGGTCTCACTAGGAGTCAGGTATTTTACACTGAGATATATCATCAGCTTTTAACTGCACCATGGAGTAAAAAATGTGCACATTACTAAAAAAAACTATGATGCAGAAGGATATATCAAATTTTAGGGGCATATCCCTTTATGTTCCTACATGTGTACTAAATAACAAATAGTCGAATTTATCAAATAAAATTGTAACAAATATTTCTTAATACAGCTCTTCTGTGTCAAAGTTAAGCTCCTCATAAATAATGTGTACGTTCATATTTCATACATACAACCTTCTGATTTGCACCAATGATGCAGCAAAGAGTCTGTACAATGGTGCAGATTTCTCTTTTTATGTACATTTCAGGTGCACAAAGTTGTGTTATATTCGATGAATTTCAGGTATCAAACTGGTTTATAAATGCACGTGTACGTCTATGGAAGCCAATGGTGGAAGAAATGTACAAGGAGGAGATGAAGGAGAACGAAAATAGCAACAACTCTGAGAAGGCTGACTTTTCAGAGGCTAATGAAGAGTTGATCAGTTCTAAATACAATGCACAACAAGAAATCAATGAAGAAAAGTTAGACAGTTTCTACTCACAGGCAAATCCAGTGACTGTTGCTGATTATGGCGTGAAGTTCGACAAAGAATCAATTAACGGAGTTCATGAAAACTCCATAAACGTAGGTGAATTCGTAGACTACTCTGTAGGAGGAATCGAAAGGTTTGGAATCGAACAATTTAACAATGTTTCACTTACACTTGGGCTAACAAATTATGAAAATTTATCGATACCTGGAGCACAACCTAGTTATATGTCGGACAATGGCATAGCATTCGAAACAAGAATTGATCATAGTAGTGCTGAAAACTATGGATTTTCCAATCTCAACAACAGTTCTATTGAGGGAAGTAAAAGGTTTGCTTCTCAGTTACTACCAGACTTTGTAGCGTAAAATCATAAAGTATATGTATAAAAAATGGGAAGGTAGAACATATATATGTATATTGTAGGTGGTGATTATATTTAGTTTATATACTTTTAAGATTGTATTTTTGATAGTACAGAAGT

Functional annotation

Database	accession number	e-value	annotation
nr	CDP10596.1	1.6e-100	unnamed protein product
Swissprot	Q9SJ56.1	2.5e-87	Protein EMBRYO SAC DEVELOPMENT ARREST 29
trEMBL	A0A068UQ86	1.1e-100	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G35940.1	44.53	9e-91	330	BLH1;EDA29	BEL1-like homeodomain 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G03523	AT2G35940.3	494	184	13	52	458	190	680	44.53	9e-91	330
AfisC8G03523	AT2G35940.2	494	184	13	52	458	190	680	44.53	9e-91	330
AfisC8G03523	AT2G35940.1	494	184	13	52	458	190	680	44.53	9e-91	330

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07526.8	POX	Domain	52	177	144.2	3.3e-42
PF05920.8	Homeobox_KN	Family	245	284	66.7	1.1e-18

Gene Ontology

Accession	Ontology	Name
GO:0000790	C	nuclear chromatin
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001103	F	RNA polymerase II repressing transcription factor binding
GO:0001133	F	RNA polymerase II transcription factor activity, sequence-specific transcription regulatory region DNA binding
GO:0003682	F	chromatin binding
GO:0051015	F	actin filament binding
GO:0003785	F	actin monomer binding
GO:0005829	C	cytosol
GO:0008285	P	negative regulation of cell proliferation
GO:0009610	P	response to symbiotic fungus
GO:0009640	P	photomorphogenesis
GO:0009737	P	response to abscisic acid
GO:0010051	P	xylem and phloem pattern formation
GO:0010076	P	maintenance of floral meristem identity
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010089	P	xylem development
GO:0010154	P	fruit development
GO:0010197	P	polar nucleus fusion
GO:0010201	P	response to continuous far red light stimulus by the high-irradiance response system
GO:0010223	P	secondary shoot formation
GO:0010227	P	floral organ abscission
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010229	P	inflorescence development
GO:0010371	P	regulation of gibberellin biosynthetic process
GO:0015629	C	actin cytoskeleton
GO:0015630	C	microtubule cytoskeleton
GO:0035955	P	negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter
GO:0042803	F	protein homodimerization activity
GO:0046982	F	protein heterodimerization activity
GO:0048457	P	floral whorl morphogenesis
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0080006	P	internode patterning
GO:0090470	P	shoot organ boundary specification

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network