result

Gene information

Detail information of AfisC8G03536

Location

Gene	Chr	Start	End	Strand
AfisC8G03536	chr8	663221300	663226462	+

Sequences

CDS

>AfisC8G03536
ATGGCAATGTTCAGGATTCTCTATCTTATATCAACTCTCTCATGTTTAAATTCAATTGTTTGGAGCAAAACAAATCCAGGTGATTTTGCCATCATACAAGAATTCATCAAAGGAATAGAAAACCCTGAAGTTCTTAAATGGCCATATAATAGCAGCAACGATCCATGCGGTGATCAGTGGCCTTTAATCTTTTGCAATGGTGATCGTATTAGCCAGATTCAAACCAAAGATCTATATTTGCGAGGCACTCTTCCTAAAGATTTCAACAAGCTTACCGAGCTTTATAATATTGGAATGCAGAACAATTACCTCTCAGGTAGTCTGCCATCTTTTTCAGGTTTATCAAAGCTTCAGTATGCTTATTTGGGTAGCAATATGTTTGATACAATACCCTCCGATTTCTTTAACGGGCTTACAAGTTTACGTGCAATAGCTTTACAAAACAACACATTATTAAACGCCACCAATGGTTGGGTATTACCTTCAGATTTGAAGGATTCTGCTCAACTAGTCAATTTGACTCTGTACTACTGCAATCTCGTTGGCTCGTTACCTGATTTTATCGGTAGTTTTAACTCTTTGATGACACTTGATGTATCATATAATAAACTCTCCGGCCCGGTCCCAAAAAGTTTTTCTGGATTACCTCTCCAAATATTGAATCTTAACAATCAAAATGGACCCGGGTTCAGTGGCCCGATTGACTTTATCAGTTCCATGACTCAATTAACTCAACTATGGCTTCATGGAAATTCATTTACTGGTCCTATACCTAGTAATATTGGCTCTTGCACTTTCTTGACAGAAGTTTGGCTTAACAATAATAAACTTGTTGGACTTATACCAAGCAATTTGACTTCATTACCCAAGCTCGAATCATTAAGGTTGGATAATAACTTGTTAATGGGTCCAATACCAAATGCAAAAATTCCAAAATTCTCATATACAAACAATCTATTTTGCCAATCAGTGCCTGGTATGCCTTGCTCGCCTCAAGTTACTGCTTTACTGTATTTTCTTGAAAGCATCAATTACCCAGAGTTTCTTGTGAATTCTTGGACTACAAACGACCCCTGTCGTTTCCGTGGTATATCTTGCATAACTAACAATGTTACTCGTATTCTTCTTTCAAATTTGAGATTGAATGGCACTATTAGTCCTTCACTTGGACAATTAGATTCCTTAACAGAGATACAGCTTGGTGGAAACAATTTAGTTGGTACGATTCCTAATGAGCTCTCTACATTGCCCTCATTGCAACTGTTGAATATATCCGAAAATGATATCGGTCCTCCTCTGCCAAAGTTTAGAACTAATGTAAAACTTATATTGGATGGAAATTCAAAACTTGACCCAAATGCTCCTCCAAAATCACCAACTACTGGAGATGGCAATGCACCAAGCACGTCCACCAACGTCGTTAAGATAACCGTTCCACTAGCAATATGTCTCATTTTGCTTATTTTGGCTATGATTCTATATGTATATTATCGTAAAAGGGCAAAGAAGGGAACCTATCCATCATTAGGTTCGGTTGTCATTCAAGATGAAGATAGGCTTAAAATTGTCGTGGCAAACAATGGCGATAACAGTGTTACATCAAGCGATCTTCCAGCTAGTACCACTAACAGTTCAACTGAAACACATATGATTGAAACTCGTAATTTAGTAATATCAGTACAAATTTTAAGAGATGTGACAAAGAATTTCTCTAAAGAGCAAGAACTCGGACGTGGGGGTTTTGGAGTTGTTTATAAAGGAGAGTTGCATGATGGAACAATGATAGCAGTCAAAAGAATGGAGTCGGGCATGCTTAGCTCGAAAGCATTTGATGAGTTCCAAGCAGAAATTACAGTTTTGTCCAAGGTCAGGCATCGTAATTTGGTGTCTTTGGTAGGGTTTTCTGCAGAAGGCAATGAGAAGCTTCTGGTTTACGAGTACATGCCGAAAGGAGCTTTGAGTAGACATTTGTTCCATTGGAAAGAGTTAGATTTGGATCCTTTGTCGTGGAAGAGAAGATTGATTATATCATTGGATGTTGCTCGAGCTATGGAGTATCTACATAGCTTGGCAAATCAATCTTTCATTCATAGGGATTTGAAATCGGCAAATATACTTCTTGATGATAATTATAGAGCTAAAGTGGCGGATTTTGGACTTGTTAAACTTGCACCTGATGGGAAGTTCTCAGTTGCAACTAGACTTGCTGGGACTTTTGGTTATCTTGCTCCTGAATATGCTGTGACTGGAAAGGTAACAACAAAAGTGGATGTCTTCAGTTTCGGAGTAGTTCTAATGGAACTATTAACCGGCATGACTGCACTCGACGAGAGCCGACCCGAAGAAACCAGGCACCTCGCCTCATGGTTCTACACCATAAAGTCCAACAAAGATAAACTCAGAAACTACATAGACAACTCACTTGACACATCAGATGAAAGTATATTTGAAGAGATGTGCATTGTTGCTGAGTTAGCAGGCCACTGCACTGCAAGAGAGCCACATCATAGACCTGAAATGGGCCATGCGGTCGGCGTATTGGTCCCATTAGTCGAAAAATGGAAGCCTGTTAAGGAAGAATACGATGAAATTTCAGGTATTGATCTAAGTCAGCCTCTTCTGCAAATGGTACAAGGATGGCAAGAGCATGAATTCTCTGCATATTCATCTTTGGTAGACCCTGATGATAGCAAAGCAAGCATTCCTTCTAGGCCTACTGGGTTTGCAGATTCATTTGCAGCTTCAAATGGTAGATGA

Protein

Gene

>AfisC8G03536
ATTTCGTCTCTTTTGGAACTTTCTTTCAAGTTTACAACTGTACAATGCTTTCCTTCAACAAGGTAATTTTAGTTTTGAATTGACATGGGCATGGAACATCATGATCACTCTGATCAATATATAATTATATATACATATTTTTTTAGGCAATATAGCAGCTGGGTGTAATTTTATTCTGACAGTTTCTTTCTTTTTTCGTTCAAAGTGAGTTCGGAGATATGGATTTTGTTTAAAATTCTTCATTTGAAGTGGATTTTTATTAACTAAAGCTAATACCTTTTAGATTTTGCATTCAACTGTGGTGAGCGTCGATTTTTCTTTTTATCGTTTTATTCAAGCGATGATTATTCATCAACACAGAACGTTTTTTTTTTTTGTTTTTTTTTCAGTAAAAATAGTTATAATTTGCTTTGAGTCGATGATTCGAAGCTATTTCCAGAATTCAAAATAAGTAATTTCATTTATATGAATTTGAGTAGGCAATTTTGGGAATTACTAAGTGTACAAGTCAAAAGATTTCTCCTTTCAATTTTTAAAGCAATGCTGGTACTTTGATTTGATACAATTCATCTTTAGTACTGCAAATTCAGAAGGGATTTGTAAGATCTCTTCGACCTTAGACTGTCTGATTGAGTTAGATTGTTTTAGGCATATTTTTAAGCATTGAAAGTGACAAGTATTATCAAAATTTACCAAGAGTCTTTATGTGCAATGTAGGTTGTTTCTCTTGATATCTCTACTGTTTTCCAATAAAAGGACTAGATAAACTCGATGGCAATGTTCAGGATTCTCTATCTTATATCAACTCTCTCATGTTTAAATTCAATTGTTTGGAGCAAAACAAATCCAGGTGATTTTGCCATCATACAAGAATTCATCAAAGGAATAGAAAACCCTGAAGTTCTTAAATGGCCATATAATAGCAGCAACGATCCATGCGGTGATCAGTGGCCTTTAATCTTTTGCAATGGTGATCGTATTAGCCAGATTCAAACCAAAGATCTATATTTGCGAGGCACTCTTCCTAAAGATTTCAACAAGCTTACCGAGCTTTATAATATTGGAATGCAGAACAATTACCTCTCAGGTAGTCTGCCATCTTTTTCAGGTTTATCAAAGCTTCAGTATGCTTATTTGGGTAGCAATATGTTTGATACAATACCCTCCGATTTCTTTAACGGGCTTACAAGTTTACGTGCAATAGCTTTACAAAACAACACATTATTAAACGCCACCAATGGTTGGGTATTACCTTCAGATTTGAAGGATTCTGCTCAACTAGTCAATTTGACTCTGTACTACTGCAATCTCGTTGGCTCGTTACCTGATTTTATCGGTAGTTTTAACTCTTTGATGACACTTGATGTATCATATAATAAACTCTCCGGCCCGGTCCCAAAAAGTTTTTCTGGATTACCTCTCCAAATATTGAATCTTAACAATCAAAATGGACCCGGGTTCAGTGGCCCGATTGACTTTATCAGTTCCATGACTCAATTAACTCAACTATGGCTTCATGGAAATTCATTTACTGGTCCTATACCTAGTAATATTGGCTCTTGCACTTTCTTGACAGAAGTTTGGCTTAACAATAATAAACTTGTTGGACTTATACCAAGCAATTTGACTTCATTACCCAAGCTCGAATCATTAAGGTTGGATAATAACTTGTTAATGGGTCCAATACCAAATGCAAAAATTCCAAAATTCTCATATACAAACAATCTATTTTGCCAATCAGTGCCTGGTATGCCTTGCTCGCCTCAAGTTACTGCTTTACTGTATTTTCTTGAAAGCATCAATTACCCAGAGTTTCTTGTGAATTCTTGGACTACAAACGACCCCTGTCGTTTCCGTGGTATATCTTGCATAACTAACAATGTTACTCGTATTCTTCTTTCAAATTTGAGATTGAATGGCACTATTAGTCCTTCACTTGGACAATTAGATTCCTTAACAGAGATACAGCTTGGTGGAAACAATTTAGTTGGTACGATTCCTAATGAGCTCTCTACATTGCCCTCATTGCAACTGTTGAATATATCCGAAAATGATATCGGTCCTCCTCTGCCAAAGTTTAGAACTAATGTAAAACTTATATTGGATGGAAATTCAAAACTTGACCCAAATGCTCCTCCAAAATCACCAACTACTGGAGATGGCAATGCACCAAGCACGTCCACCAACGTCGTTAAGATAACCGTTCCACTAGCAATATGTCTCATTTTGCTTATTTTGGCTATGATTCTATATGTATATTATCGTAAAAGGGCAAAGAAGGGAACCTATCCATCATTAGGTTCGGTTGTCATTCAAGATGAAGATAGGCTTAAAATTGTCGTGGCAAACAATGGCGATAACAGTGTTACATCAAGCGATCTTCCAGCTAGTACCACTAACAGTTCAACTGAAACACATATGATTGAAACTCGTAATTTAGTAATATCAGTACAAATTTTAAGAGATGTGACAAAGAATTTCTCTAAAGAGCAAGAACTCGGACGTGGGGGTTTTGGAGTTGTTTATAAAGGAGAGTTGCATGATGGAACAATGATAGCAGTCAAAAGAATGGAGTCGGGCATGCTTAGCTCGAAAGCATTTGATGAGTTCCAAGCAGAAATTACAGTTTTGTCCAAGGTCAGGCATCGTAATTTGGTGTCTTTGGTAGGGTTTTCTGCAGAAGGCAATGAGAAGCTTCTGGTTTACGAGTACATGCCGAAAGGAGCTTTGAGTAGACATTTGTTCCATTGGAAAGAGTTAGATTTGGATCCTTTGTCGTGGAAGAGAAGATTGATTATATCATTGGATGTTGCTCGAGCTATGGAGTATCTACATAGCTTGGCAAATCAATCTTTCATTCATAGGGATTTGAAATCGGCAAATATACTTCTTGATGATAATTATAGAGCTAAAGTGGCGGATTTTGGACTTGTTAAACTTGCACCTGATGGGAAGTTCTCAGTTGCAACTAGACTTGCTGGGACTTTTGGTTATCTTGCTCCTGAATATGCTGGTATGCTGTATTACCTCCATAACTACCTTACATTTACACATCTGTATTTTTCCACCTTTTTTTTCCATTTATTGTTTAAAAACTATACATTTCCAAATTGTGGACGTAGCAACAATACTCTAGGTCTAACCAGATGTTTCTGTCATGTTATATAAGCCAAATGTAACTAGTCTCATGAATAAGGTTTAAATATTTATACTAAGAGTACTCTCATGAATAAGGATGTATGGCTACAAATGAATGTCATCGCGCAGATTGCAATCGTAGCCATGCATTTTTTATTAGGTACTTAAATGATGGATAAGAAACTGTGTCGGAGACACGTGCGTTGGGCAGTGATCTTTATAATATATTATATGTAGTGGGGTGAGTTAGCTGTGGAACTGCCCTCATATCTTTTGTTGAAAGTACTTCAGGTTAAAGTATGTCACATGAAGTGTTATAACAACATACATGATTACCAGTATATCAATGTTGGTTCGGTTAATGTCTAGAGGTATTGTTTCAGAAAAAAAACTTAAAATCAGGCATTGTTATAAGTATAGAAATCTTACTACTTGAATCATGTTTCAAATCCAATCTCTCTAGTTGTGATTTGATTCTCAAACTCTAATTCAGAACTCAATTAAAATCGCTATTAAGAAGGAAAAAACATTCAGTATATGTTGATGTTATTATATATGAAGATTCTTATTCAATACTTTGCGGTGTGGCTCTAGGATAAGGCGAACATGCCAATGTGCCAGGGCAACCCCTAAGTAGAGTAACCCAAACAAAATCTTGTGTGTGTAATAGTGTATGTCTAATACTAGTTTAACGAATCAAACATTGGGTTTAGTGGTTATAACTTTGCATTTTTAATTGAAGTTCAAACTTAGTTAATTTCATTTATTTATCACTCTTTGCACTAACATAATTATTATTTTTCAACAAATAGGAGCGCTTTACACACCATTCAACAGGGGCAAATCCAAACGGTTTGACCGACACAGAATCTATGATAAATTTTTATTGTTTTATGAAACATATTAAGATAAATCAAGGGAGAAAATTAAGTTTTTGGTTTGAATGTAGATTTTCACAATCAAAACCAGATTAAAAACATAAATTATATCAATGAAAAGGAGAATAGATGTTTTAACATATTGAAATAACAACATAATGAAATGCTATTTGATAATCTGTATGGATCAAAAGATTCAAAACTCCCAGAATGCAAGCATGTGAGAATATTAAAAAAAAGTACCATTTGAATCTGCAATTTACTCTCTAAATCTAGTTTCAGTTTGAACTTTATGATTAACGCTTAGAATTTCTTTCGAAAACCTTGTTAGAGGCATAATTTTTTGTATTTTAAACTCTACACATCTTCATATTTTGTTATTAACTCCCTAAGTTTTTTTTCCATCTGAACCAGTGACTGGAAAGGTAACAACAAAAGTGGATGTCTTCAGTTTCGGAGTAGTTCTAATGGAACTATTAACCGGCATGACTGCACTCGACGAGAGCCGACCCGAAGAAACCAGGCACCTCGCCTCATGGTTCTACACCATAAAGTCCAACAAAGATAAACTCAGAAACTACATAGACAACTCACTTGACACATCAGATGAAAGTATATTTGAAGAGATGTGCATTGTTGCTGAGTTAGCAGGCCACTGCACTGCAAGAGAGCCACATCATAGACCTGAAATGGGCCATGCGGTCGGCGTATTGGTCCCATTAGTCGAAAAATGGAAGCCTGTTAAGGAAGAATACGATGAAATTTCAGGTATTGATCTAAGTCAGCCTCTTCTGCAAATGGTACAAGGATGGCAAGAGCATGAATTCTCTGCATATTCATCTTTGGTAGACCCTGATGATAGCAAAGCAAGCATTCCTTCTAGGCCTACTGGGTTTGCAGATTCATTTGCAGCTTCAAATGGTAGATGATGATGGTGATGATCAAGTTTGCACTTATGTGGTACATTCTCTTGTTCCATTTTGCAATTTTTTTTTATATATGGTTTTTAGATATAGGAAGGTTTCATGGTTGGTTCAATTTTATCATTGGTTATTGGTTTATTATATACATTGCATAAACTTCAAATATGCTGTTTTACTTGTTTTGAAACAAAAGTATTATATGATATAAACAGAGGTTGTTTTCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260416.1	1.2e-306	receptor-like kinase TMK3
Swissprot	Q9FYK0.1	1.3e-164	Transmembrane kinase 2
trEMBL	A0A5P1F0T4	8.9e-307	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G01820.1	46.15	0.0	766		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC8G03536	AT2G01820.1	908	436	17	51	918	49	943	46.15	766
AfisC8G03536	AT1G66150.1	933	451	20	27	918	27	942	45.44	745
AfisC8G03536	AT3G23750.1	905	459	18	41	918	38	928	44.75	703

Ortholog group

Species	Genes
Allium cepa	g231446.t1; g281542.t1
Allium fistulosum	AfisC8G03536
Allium sativum	Asa1G01705.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	29	66	12.0	0.17
PF08263.9	LRRNT_2	Family	331	366	23.7	4e-05
PF07714.14	Pkinase_Tyr	Domain	572	842	154.9	2.2e-45

Gene Ontology

Accession	Ontology	Name
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009555	P	pollen development
GO:0009941	C	chloroplast envelope
GO:0010068	P	protoderm histogenesis
GO:0019901	F	protein kinase binding
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0042335	P	cuticle development
GO:0046777	P	protein autophosphorylation
GO:0048367	P	shoot system development
GO:0071323	P	cellular response to chitin
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K00924	E2.7.1.-; kinase	EC:2.7.1.-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network