result

Gene information

Detail information of AfisC8G03642

Location

Gene	Chr	Start	End	Strand
AfisC8G03642	chr8	675856797	675859743	-

Sequences

CDS

Protein

Gene

>AfisC8G03642
ATGCAAGTAGGTTTAGTTTCACACAAGAAACTGATTCACTTGAAAGAAGCGGCATTCTCAGGGAACTTTACAGAAGCAGTGACATGCACAAGAGATATAATCAGTTCTGGGATTGAACTGAATGCATTAATGTCACAACTTTCATCTTTTGTTGTAGAACTTGTATCAGATACTAGTTTCTCAACTTTAAATACAAGTTAGTGTTAGACCTCAATTTTCTAGATTCCATATTGGTTGTTGTTTTTTGTGTTAGTTTCACTCTCATATCTAAATATTAACGCATCAGAAAAATGGATGGAGTGGCTATGCAAAACTCTACAAATATTGACTGAAACTGAAAAGGAACTTATGAAGATTGAACACAAACACATTGCAACGGTAATTGCTGCAGTACTGCAGATTGAGTCAGCCTCCCCTTCAGGTACATAATATTGATATTCTTGAACTGCAAATGTAACTAAGTATTGTTTAGTTTTGGGCTTTTATTGAAAAAATTGCAGAAGGAATATGCCACCTACAGAAAAAATCAGACATGGTAGATACTGAAAGGAAGTCAATAGCATAGCAACTTAGCAATGGTTGCTCAACCAATGAAAAAAGTAATGGCACCGAGAAATCTAAAATAAATGGTGAAGCTCTGAATGTGGGCCAGAAATATGAAAGCGTTGATTCCATTGCAAAAGCAGCTGAGCTCAAACTCAGGTTACTTTCATTAACATCATTTTCGCTAATAGATGCGAGTATTGAGACATACAGTCAAGACTTATTATTCGAGGAGGCAAATCTAAGTAGGCGTTTACTAGACAAAGATTTTCTTGGACCAGGACAGCACGTGCATGGAAAACATTACATGTGAGCTTGAACTAGTTGATTTATATACATTTGTTGTAGAAGAAAAATATCACCTACAAGGCAAGAACTGACACTAGGCCACTAGTCATAAACTTACTTTCATCTCCTTTGTTGTTTAGGAGTGGTGAGCTGAAGTGGTCTCAGAGTCGCACTACTAATATTGGAAGGAGAGAAAATGTAAGAAATTTTGTTATTTACATCAGATTTGGATCACCTACTCTGGTTTTGGGCACAGCAGTCAGTGCATTTCAGTAAACTTTTAAACTATGCCAAAATACACTAGTAGCTGTTAAGAGGCTAAAAGAAGAGCGAACACCAGGTGGTGAACTTCAGTTTCAAACAGAATTTGAGATGATCAGCATGGCAGTGCACTGGAACCTTCTCCGTCTTCGTGGATTTTGTATGACCCCTACAGAATGCCTTCTTGTGTATCCGTACATGGCTAATGGAAGTGTAGCTTCGTGTCTAAGAGGTAACTTTATCCATTTCTTATAGAACGCCTTATTGTGTATCCGTACACTTCTTACATATTTCAGTTTAACAATAATTTTTTAATCTGGTTTATGATAGAATTGCATAAATTTTATTGATTACATTCTAATACAATCTCTACTTTTGCTTGTTTTTTGTAAATTTATACAGATGAAAAGTTGATGTTCTTTCACATTTATTTATCCCACCACATACACATGCTCATATGATAATGATTTGTGCATGGTGCTTCTTCATGGTTGATGTATTTTGAAATGTTTATTAATGATGAACGTTTTAGACTAGCATCTCCTTGAACACATTCATGCATTCACTATAATTTTTTTTAGCAATGATTTGAACTTTTGATTGAAAAACTATCCCGTACAGGTTGTGTGGTTTGTATTAATCTTATTACTCTCATATATGTTATCGCATACATATATGAATGACTAGTATGGATATGACACTTAGATTACCTATGTTCAATTCTACAACCACAATTTTGAGTCTGCAAGTAACGACATCTACCATGTATATATTTTTTCCATAAACTAGTTAAAATAAATTAGCACTACATGAAATTTTGTTAAAATAAATTAGCACAATTTGATTTTGTATTCCTTGTAATTATATTAAATAACCCGTTTAATCTTCAAGTAACTTTGTTTTGTTGTGTATGCTGTTGCATAGTTGGATTTGAGGCCAAGATGGCCTTTGGTGAGGAATATTTGCCAGGAAAAAGTGAGGCTTGCTCCATGAAAAAAGTTCGGGTATATCCATCTCTTACATCCACTGTACAGGGACCGTATAAAATTCAAATAGTGTTCTCCGCTGAACTGTAAGTTAGTGTAAATATTTGGTTTTCTTTCTTCTAAAATTCAAATAGTGTTAGGGTTGTTGAATCTACCATTATTTTTATTTTTATTTCAAAAATAGTGACCGTATAAAAACTATTAATTGATGACCCATAGGCTGCAACTGATAAAACCATGGGCAGTATAGTGTGATATGTTATGTCCACCAAACTCAATCAACAATTAATTATAGTTTAGTCATGTGCTAACACTAAGGAATAATGCTAAATGAATTTTTTTAGCATCTCTAAAACCTTAATTTTATTTACGTGAGTAGAAGCTTCCTCTATTATAGCTGCAGTCTATATTTTATTTAAAAGATAATAAAAGTAAATCTAAGGATGAATGACTAAACTGCAAGGACCACGGTCTTCATGCAATTTTGGGTCGCAGAACCGAATTGCTATCATCTAAAATTTTTGTATGTTCGGACAGAGCATGTTTAATTTTCATTTTATTTTTTTAAACTTCAAAATCGGCAATAACTAAATTCATAGATTTGTATACCCATTATTTGTATATACAATTGAGTGATAAGTTGGCAGTAAATTGAAATAACTAAATTCATGATTATTTGTATACCGATTATTTGCATAATTTAAAGGAAGTTCAAAGTTTAATTCAACGGAAGTTTAAAGTTTAATCTCATTTTATTGGCTGTTTATTCTTTTGTTGTTATTTTCAGGTTCCTCTTGAGTCAACTATCCCACCATACATTTGAGGTAAGCATTTTGGATCTTTTTTTCATGCCTTACCATTCTATTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	GFA80500.1	2.4e-23	somatic embryogenesis receptor kinase
Swissprot	Q9XIC7.1	1.1e-25	Somatic embryogenesis receptor-like kinase 2
trEMBL	W1NGJ3	2.9e-23	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34210.1	93.55	1e-28	124	ATSERK2;SERK2	somatic embryogenesis receptor-like kinase 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G03642	AT1G71830.1	61	3	182	242	329	389	95.08	1e-28	124
AfisC8G03642	AT1G34210.1	62	4	181	242	331	392	93.55	1e-28	124
AfisC8G03642	AT2G13790.1	71	12	181	251	320	390	83.10	7e-28	121

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	181	244	25.5	6.3e-06

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0016021	C	integral component of membrane
GO:0005739	C	mitochondrion
GO:0005576	C	extracellular region
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0005524	F	ATP binding
GO:0006468	P	protein phosphorylation
GO:0008289	F	lipid binding
GO:0009556	P	microsporogenesis
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0010150	P	leaf senescence
GO:0010152	P	pollen maturation
GO:0033612	F	receptor serine/threonine kinase binding
GO:0051607	P	defense response to virus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network