result

Gene information

Detail information of AfisC8G04193

Location

Gene	Chr	Start	End	Strand
AfisC8G04193	chr8	773531508	773533304	-

Sequences

CDS

Protein

Gene

>AfisC8G04193
ATGGAGACCACACTAAACTTTTCAAGAATTTCTTCTTTGTCTTCAAACTCTTCGATGGTAGCGCACCCAGTTGAGCCTTTAAGCAATGTTTTTCCAGCTTTAACTAGTTTTACTGGCAATACTCCTGATTATAGTAGACTGTCATATAATCAAGGAGTCAATATAGATGTTGAATATTTGATGAGGAAAAAAATTGAAGGCAGAAACCAAAAGAAATCAAACATTGTGAGAGGGAAATGGACGCTTGAAGAAGACAGGTATATTACACCTACTATTACATTTTATTTATTTATTTTATTATTTTTAATTGAAACTGTAATTATAACATGATGATTCAACTTTAGATTATTAACTCGGTTGGTAGAGCAATATGGACTAGGGAAGTGGTCTTATATAGCACAATTTTTGAAAGGAAGAGTTGGAAAGCAATGCAGAGAAGGCATAATCATTTGAGGCCTAATATAAAGGTTAAATTTTAGTTGCTTATTTTCCAAACCTTTCCCATGCCTTATGTATTGTTCATCATTGATTTTGCTAAAATCTTTTCGTATTTCATAAAACCTGTATATGCTTCCATGTATTTTTAAGTAAAAGATGATAAATTAGTTGCATAAGAGCTTACTTGTAAATATTGTTTTCGAGAATGGTATATATTGTTAAGTAGTAACTTTAATATTCTATGGAATTTTGCCACCCATGCTTGTTTTTCTCTCTCAAAATTTCTAGATATTTGTTAGAAATAAAACATTCGATTCATTTTGTCAATATGAAAATTTTAAAAATCAAATAAATAGTTTCTCTGCCAAACTCATGTAATTACAATTGTATAAGGATTGTGATGAACATTGGTTTATCTAGGTTAATTGATATACAAATGCAAATGATAGGTAAAAAAATTTGTAATTTATGTTTTTGCCAGATGTAATCATTAATGACATGACTGATTGACTTAAATATTCCACAATATTCTCTCATTTCCTTTCCTCTTTTGTCTACATTAAAAAGTAATTACCTAAGGGTAAATTAAGGATGCATTACTACTATGTTTAATTAGTTATTAATTAGAATGAAGTATCTATTAACATTATTTGCAACTTCTCATTATACATAATTTAGTGCTACACTAATACATACTGAATTTACTTTTATGGTATTTGTATTATACTTTATTTTTATAATCATTTTGTGTTCATAACGTTTAAACAGAAGAATTCATGGACCGAAGAAGAGGACTTAATTTTAATCAATGCTCATATTGAAACTGGAAACAAGTGGACAGAAATTGTGAAAAAACTGCCTGGTAGAACCGAGAATTCGATCAAGAACCACTGGAATGCAACAAAAAGAAAAGTTTTAAGAAAACGTACTCGAGCTTCAAAATACCCTAATTCAGGCAATCTTCTGCAAAATTACATCAATAGCTTGGGCATAACACACTCAAATCAGCCAACAGTTTGTTTCCAAAATAATAGCCTTCAGCCTCTTACTAACATGAATAGCTTTCGGCCTCTTACAAGCATGAATTGCTTCCAACCTCTTACAAGCTTTAGTAGCCATCAGCCCTTTACAAACCTTAATAAGATGAATAACTTTTGCACTCCTCTATCCCTTGTTAATCATCATCGGTATGGTGAAAACATGAATGATTTTGGCAAAAAAGTTGATTATGGGGTGAAAATGGAATGGGATAACGAAACATTAGGATTTGACAATAGGAAGATGGAGATGGATCTTGTGGAGATGATCAACTATACTACCAAACCATGTTTTAATAGCAACTCCTTCAGTTTCTTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK79403.1	1.7e-42	uncharacterized protein A4U43_C01F6000
Swissprot	Q9S7L2.1	4.8e-29	Myb-related protein 98
trEMBL	A0A5P1FNV7	1.3e-42	Transcription factor MYB98-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G18770.1	51.47	7e-32	134	AtMYB98;MYB98	myb domain protein 98

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04193	AT4G18770.1	136	51	3	71	195	211	342	51.47	7e-32	134
AfisC8G04193	AT3G27785.1	151	66	4	71	209	183	330	46.36	2e-30	129
AfisC8G04193	AT5G40360.1	136	62	3	69	195	150	285	47.79	5e-27	118

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	121	163	53.8	1.5e-14

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0051726	P	regulation of cell cycle
GO:0005654	C	nucleoplasm
GO:0006338	P	chromatin remodeling
GO:0010183	P	pollen tube guidance
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010262	P	somatic embryogenesis
GO:0010439	P	regulation of glucosinolate biosynthetic process
GO:0031523	C	Myb complex
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045697	P	regulation of synergid differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0045995	P	regulation of embryonic development
GO:0051302	P	regulation of cell division
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0055089	P	fatty acid homeostasis
GO:0090307	P	mitotic spindle assembly
GO:1904095	P	negative regulation of endosperm development
GO:2000692	P	negative regulation of seed maturation
GO:2001280	P	positive regulation of unsaturated fatty acid biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network