Detail information of AfisC8G04208


Location
GeneChrStartEndStrand
AfisC8G04208chr8776953576776964415+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020272757.18.2e-61transcription factor TCP2
SwissprotQ93V43.11.6e-32Protein TEOSINTE-LIKE1, CYCLOIDEA, and PROLIFERATING CELL FACTOR 2
trEMBLA0A5P1EH115.9e-61TCP domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT4G18390.144.304e-51 199TCP2;TCP2TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag352230.t1
Allium fistulosumAfisC8G04208
Allium sativumAsa1G01424.1; Asa2G05655.1; Asa6G02784.1; Asa8G03822.1
Arabidopsis thalianaAT1G30210.1; AT1G30210.2
Oryza sativaLOC_Os12g02090.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03634.10TCPFamily71205130.76e-38

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005739Cmitochondrion
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0008285Pnegative regulation of cell proliferation
GO:0009416Presponse to light stimulus
GO:0009507Cchloroplast
GO:0009733Presponse to auxin
GO:0009793Pembryo development ending in seed dormancy
GO:0009908Pflower development
GO:0009965Pleaf morphogenesis
GO:0030154Pcell differentiation
GO:0031347Pregulation of defense response
GO:0045962Ppositive regulation of development, heterochronic
GO:0048262Pdetermination of dorsal/ventral asymmetry
GO:0048518Ppositive regulation of biological process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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