result

Gene information

Detail information of AfisC8G04225

Location

Gene	Chr	Start	End	Strand
AfisC8G04225	chr8	780281414	780285873	-

Sequences

CDS

Protein

Gene

>AfisC8G04225
TTTTGAGAATATAGAAAATGTCTGCCCAACTTGTTGCACCAGAGCATGTTTGTTATGTCCACTGCAATTTCTGCAACACCATCCTTGCGGTATGCTTTTAGCTAATTAATATAAATTCATAGTTCTCTCAGATTGTACTAAAAATATACCTTGATGTTATGGTATTTTGGTTTTTGTTTATACGTTTGTCTATATTATTTACGATTGCATTGAAGATTTGATATATTTGCTAGATCTCTAACTTCATAATATTATTCTTCTTTGAATTGGTTAGTTTTCCATCTTCAGACTGTTTAGCTACGTTTCTGTCATGGATCCTATTTGTTTCTGTGGACTAAACCTCCTCTTTCTTCTTCTTCTTCTTCTTTTTTTTCCTTCCCTTCTTCTGTTTATGGCTGAATTTTCACATGATTGAATATCGTTTCTAGAAATGATTTCGTGGTGGCCTTTTATGATTACTTTGGTGTCTCGTAAGAATACTGTAATTTTTGGTATTACACGGTCGATTCGTTGAATTTCAATTTGTTGAAGTTTCTGATTTCTTTTGGTTTTATTTTTTATGTTAAAGATAAGTTTCTAATTAATTATCAGCTTTTCCTACTAACTAGCCAGTTAATTATTTCTTCTTTATTCCAGCAAACTATCTATTTGGTCTAATTTGATTTTCACATTTAGCATTAATTACATATGAATTATATACATCTTAGGAATAACTGTTTTTTCTTTCTTTTTTTATTTTATAGTCTACAGATAATTTAATAAAAAATATGAGTGTATTCAGAATTTTTTTTTACTTGTTCACCATTCCAATTTTCATCAACTAATTATATCCCTGCATACAAAATCGCAAGATACATCAACTAATCATAATATGAACGCAATTAATTAAGAACTAGATGACAAACTAAACCTCCCAGATTCAAGAAGTATGAGACTTAAACTGAAATTATTACTTATTTGTTATTCTGTTGGTGAATTCATTAATGTTTTTGTTGATGTGTGTATCCTATGCATAATTTCTTGTTTTCTTCTTAATTATTTAAAACTTGCGTTATATTTCCTTCTGATTGTTATCTTGATGAAAAACAAAGTTAACATGTGAGAATTATTCATATGATATCAATATAGAGTTGTAAAATATGATTATTGATCAACTGTATATAATAAATTAAGTGAAATTTCAGGTTAATGTTCCGGGCAACAATATGATAAACATAGTGACAGTAAGGTGCGGGCATTGTGCAAATCTCCTCTCTGTAAATTTGGGAGCTTTACTGCAACCTCTTAATCCTCTTCATGAATTTCAGGTCGTTTTTATTCTTCCATTTCCTCCATTTTAGTTTTCTACCTAGTTGTGATCTTCACTTCTTGATTTATATATCGTCTACCAGGATTTACTTAAACTAATACATAACATCCGTTACTGGTTATATCTGCCTATATTAGAATCATGGTATATTATATGAGTACAAGAACACAGGTTTTTATATAACTTTTCATATGCAAAAAAAGTTTTTAGATTAGTGCAACATCGAGCAATTCCCTAATGTAAAATTGATTGTTCATCAATTAAAATAAATATATAAAATAAGCAACAAGTTAATCAGAAGTCTAGACTAGTTTGTTTATATATACATGCATATATATATATATATACATATATGTATACATACATATATATACATACATGTATACATACATATACATACATGTATACATACATATATATGTATATGTATACATACATATATATACATACATGTATACATACATAtATACATGTATACATACATATATGTATGTATATATATATATATGTATGTATATATATATATATGTATGTATATATATATATATATGTATGTATGTATATATATATATATGTATATATATATATATATATATATATATATATATAtgTGTCTGTGTGTGTGTTTGTGTGTGTGTGTTGAAAATTGATTGGAGAAATTAATATTGCAGAGTCATGTACATGCAACATCACAAGAATTCCAAAAGGACCGCATAGGTTCTTCTTCAAAATGCACAAGGAAATTGGCATTCTTCTCACAAGATCAGCATGATCATACACAAATCTTACCAATCGAACGTAAGTAAGATCTTTACCATTTTATGTGTGATGTTATTTGTATGATATGTTTTTTAAAGGGAAACTAATAATTGATAGGTTTCTAATCTAGAGCTTTACTCCATCATCTGTATGGACTTCACATCCAAATGTCTCACCACCATTATTAATGACTTAACACTAATTCTACCCATGTTTGAATAAATGCAAGTCTGCACAGTGCAATTATAATATATAATATTTATAATTGATACCCCAAGTTCATCTCAAATATATGTGAGCAATTGTAAATGAAGATACTAATGTGTCTTCACTTGTAACTAAAGTAACTTCTACATATAATTATAGCCACATTAATTATATTATCGTTTATTTAATAAAGATTGAAGGATGTAAAATATGACCATGGGTAATAGAGATAAAATACTTGGTTGTGCAACCAAACTTCAAACCCGATGTATATTCCATAGCCAATTCTAGAATAAATAAATGAATAGAAGGTAGTGGGATTCATGGTTAAGTCGGAATACTTTATGAATGTGTAAATTAATGAAAGCTTGAAATTACGAATTGCGTAGATGTCCTGTCAAATTTAACCATGGGTGACGCTAAATATACAACGCATATATCTACACACATATGTATaATTGATTGATATATATGGTGTTCAACCTTTTTTTTCCGCAAGGCAACTAGGGCCCCTTCATATTTATAGAGTACAAGCATACATAGTTGTATCTTTATAAAACACACATTTAGAAATGGTTATGAAGCAATGTTATGTTCATACTTATTCTATGGTTATGAAAATAGTATTGAGAATGTGGTCTTATACCTTCAGTTAATAAGTTGGTGTTTTCTAATTTATCAATAATTAATACCAGTTCTCTAGGAGAAAAATTATATTTGAAATTAGGGTATCCTTATTTTCAAACTTATTTCACTTTCCGCACTTGCAAAAATAAGTTTCATGAAACATTACTGAAATTATTTTCAGTAAAAATTTGCAGTTGGCATTCGAAGTATTTGTAGTTTTCATTTTTCTTTTCTATTTTTTTTTATTTTTGCAAATATTTACACCAAAAACTACGAATCTCTTTTCAGTGCAATATTTATTTTGTAAATATCTGCATTTTTTTCTGCATAAATTTTCTTGAAAATAATTCGAGGAGGATTTTGTGAAATGTTTTTGGAAAGAGGAGGAAGTGTAATTTGAAACTTACTGAGGTATGTTTGACAAACCAACCCAAGATAATAATGCTATATTTATAAAATTTGTTGATAAACAAGATAAATTTAGTTATAAAGCCCTTAATTTTGCATTAGTCATCATCTTCTTCTTCTTCTTCCTTAGCACTATTTTGTGTTCTTGTTTTCTTTTTTACAACTGTATTTGTTTATATATTTTGTGTTATATTATCGTATTTTACCATTTTGTTACAATAAATAGACATAATATTTCTTATTTTTCAGCTCCTGAGAAGAGACAACGTGTACCTTCGGCTTATAACAGGTTTATCAAGTAAGTCATCAATACTATAATGTAATAAGTTATTATTATTGCAGTACCATGTACTCAACATGATTTGCATACTTGAAAATAATAACTAGGGAAGAGATTCAAAGAATTAAGGTGAACAATCCTGAAATTAGCCACAGGGAAGCATTCAGTGCTGCTGCTAAAAATGTATGTATATATTGTATATCTACATATTGTTATACCCGTTTAACCCAACCGCAAAGCCAAAATGTTTAAAAATTACATCTTCCTTTCAATACGGGAATGCCAACAGTAAATATGCATGATATTGACTCAATGATAATAAATGAACAATGCTATAAAGTTACATCATTTTAAGGATCACCAACCAATTTTATCATGTAAGCCTGTAACATTGGTACAGAGATATGATAACAAATGAACAATGTTGCAAAATTATACCATTTTAAGGATTACAGAAACTGTGGAACCCATGATTATTATTATTTTTTCATTTTAAAATTGTATATGTTAATTAAGCTAACTGGATTAACTGATGTTCTGTTTAATCAATATACAGTGGGCACATTTTCCGCATATTCGTTTTGGACTTGGTCTTGATCGCGACAATAACAAGCAAAAGAAGCTCGATGAAGTTGTCATAAATGAGAATTAAGGTGCGCAGAATGCTCAAAGTTTATTCTAATTTCATTGGGTGCCTCTCAAAAGCATAAATATGCAAATATATATGTGCATATGCAATGCTTTAAGTTGTATACTTCTTATTTATCGAACTTGTTCAAGTATAAATAATCATGATCACTGGTATATTATTGATCATTGTAATTATCTATTTGTTACAAAATACCTATATTTATATATAATCTAAATTTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255937.1	5.6e-62	axial regulator YABBY 5-like isoform X2
Swissprot	Q10FZ7.1	7.1e-54	Protein FILAMENTOUS FLOWER 2
trEMBL	A4PB50	4.5e-61	YABBY2 like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G08465.1	57.47	2e-49	191	YAB2	Plant-specific transcription factor YABBY family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04225	AT1G08465.1	174	68	4	9	179	8	178	57.47	2e-49	191
AfisC8G04225	AT2G26580.2	172	66	3	1	172	1	163	56.40	1e-46	182
AfisC8G04225	AT2G26580.1	172	66	3	1	172	1	163	56.40	1e-46	182

Ortholog group

Species	Genes
Allium cepa	g79170.t1
Allium fistulosum	AfisC8G04225
Allium sativum	Asa1G01403.1
Arabidopsis thaliana	AT1G08465.1; AT2G26580.1; AT2G26580.2
Oryza sativa	LOC_Os03g44710.1; LOC_Os03g44710.2; LOC_Os03g44710.3; LOC_Os07g06620.1; LOC_Os07g06620.2; LOC_Os07g06620.3; LOC_Os07g06620.4; LOC_Os12g42610.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04690.10	YABBY	Family	7	160	233.9	1.2e-69

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009909	P	regulation of flower development
GO:0009933	P	meristem structural organization
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0010022	P	meristem determinacy
GO:0010093	P	specification of floral organ identity
GO:0010154	P	fruit development
GO:0010158	P	abaxial cell fate specification
GO:0010450	P	inflorescence meristem growth
GO:0048440	P	carpel development
GO:0048833	P	specification of floral organ number
GO:1902183	P	regulation of shoot apical meristem development
GO:2000024	P	regulation of leaf development
GO:0090706

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network