result

Gene information

Detail information of AfisC8G04293

Location

Gene	Chr	Start	End	Strand
AfisC8G04293	chr8	796194442	796201594	-

Sequences

CDS

Protein

Gene

>AfisC8G04293
ATGAAAGCATTATCTCATTGGCTATGCTTTTCGCCAATTCATTGCTCTCTGCTCAAATAAAATAGCCATTGATCTCTTCTCTTTCTCTCTCCCCCTTTCTCTATTGGTCTTCAATTTCTGATTCCTTTCTTCTATTATTATGCTACTAGGATTCTATTAACTGCTGCTTCAGCTCAAACGTAAGTTTCTTTTTAGTTCTTTCCTTTCTTTTCTTTTTTTCATAAAAAGACTTTGTACCAACTAACTTCAAAATTTTACCTATTGTTTACATCTCTCTTCATTGAACTATTTGTTTTTCGTATTCAATAGCCATTTTAGTTCATGGGTTCTTCTTGGAAGTGGATATTTATGTTGCAAGTTCTGTTTTTGACTATCGATTTTGGTTAAATTGTGTGTTTTTTCGAATGGGTTTCTCTTGGAATTTTGGACTCATACGCTGGGCAAAGAGAATGATGCTTTATGACTAACTTTCTATACTTTTATTCTTTCTTCTAAATTTAGTCGATGTTTATGTGTGGAAATCATGCACTTTTTGGCTTGCGTGAATCAATATGAATTCTTTATAATCTTGTCTATGTGAATTATAGTAGTGTAATAGCAGTTACATAGTATGAATCAGTGGCAGTTGTGTAATTGATGCACTTGTGTTATTTTTCATTTTTTTCAGAGACAGTATCTTCTATTCTGGGTATAAATTATTTTTTGAGGCTGTTTTCCGTGTTTTTTCAAGATGCAAACTGCTTTGTGCTTCAAACCAAATGAAGGATTGGGACAGCTTAATGTTTCTCATTCTTTACCATGGTGGATTGGAACTCAACAAATATCTGGAGAGAATTTTAATCAGTTAAAATTAGTAAATGGACATATTGGCCATGGTATTGATCAAAACTCGGATAAAGATGCTAGTGATACAGCCAAATTTTCAATAATTCAAGGTAAAATTTGTATAGTTGTCATTTTCTCATGGTTTTTTAACTGGGTAAGTTCCCCAATTTCGCTACATGATTTTGATCATTTAGCACTCAGTATCAAACAAGATGTGCATTATTCCTTGTCAAGTGTACATGAACTTGTTTTAAAATTGTTCTGAGTTCCTATCAATGTAGTTTTTAGTAAGTTGTTTGTAGGATATTCTAAAACCGTTTTATTGTCATATAACATAGCTTACTACGTTTAGTTGGTTGGACAGAGTCATATTAGTTAGTATATTGGTATAGAATAATGCCATTAGATCATTGGTTTTCTCACTTTGTTTTCATGTAGTTGAATCAACTAAAATAAAATAAAAGGACAAATAGAGAAAACAAGAAAATAATCCCTGATCTTAGGAGAAGGTTTGTTTGGATTGATAGGTTAATGGAGTAACTGACATTATCTTGAAAATCTAAGAGTAAATAAGCTAGGGATAGGAATAAGTAAGAACACATTAGCGTTTGTTTTCTTAAAACACCCTTGGAGATGTCATGATAGTTATTACGAAGCGATAAAATTTACAGACTGAAGAAGATCAATCAATGATCTATTGATGGAAATGGACCCCTAATCAGTAATATTTTGCAATGCTTGTAACTATATACCAAAAATAAATATAGAATGTCTGGCCCGACGTTTGATAATAAACAAAAATGCTACTATATACCCGAATTTGTGTTTTGTCAAATTCTACACTAGAAACAAAAAATATAAAATGGATCACAAATCAAATTACCAAAAGTGGAAATTAGGATCCGCAACTTGTTTCCAAACTTAATACCTAAAAACCCAAAAATACGTTTTACGAAACACTCCATCAAAATTTCCAGTAAAAATATGCGTTTTAAACTGCATATATTTGCAGCTAGAACCACATATATTTGCAGCTAGAACTTGCAGCTAGAAGTGCAAATATTTGCAGTTTAAAATGCAAATATTTGTAGTTTTAGCCACAGCTTTTTGTAAAGTGAAAATTTATAGTCCGGCTGTAAATATTTAAAGTGTAGAATTCACATTCTTGCTATGTGGACTGCAAAATTTTCATCTTGCAATAATATGCCGTGAAATGCATACTTTCATAAGAAAATTTGACTGGGGTGTTTCGTTAACTTTTTTTAAGAGAGGGCGGAAGTTAATTTTGAAACTTTTGAAGGGTGTTTGAAAAAATGTCCCTTACCAGAATGCCCCTTAAATTCCTCAGTTCTGCCTATTCTTACATTTTGACAAAATTGAATTTATGTCATTATAGCAAATTCCGATAATAAATAGCAGTTCAGCTCATAAGAAAGGCAGTGCATGGCAAAACACAGTTCTGGTAAACCGGTGAAAAGAAAAGCTAGTACTCATATATGCTCAAAATAAATCAAATTATTTACTTGTGGATTATGTACTTTGAAATAAAGCTGACAACAGATATACCAGTACATAGGTGGATAAGAACATAGAATTATTGTGCATGTGACACCAATATTGTTGCCTTTTGACCCTTATCTCATAATCATTTTCAAAATAAAGTAATCAACCATTAGTTTATGTAAAAGGCACTGTCTTAGTTTGTTTACAGTAATTTTGGTGAAACATCCCAGTTTGAAACTCCTCAATTCTGCTATGATGAACATTTTCATGTAATACGATTTAATTGGCTTATGTATTAGTAGCCAAGTGACACTGAGGACGACCGACTGAAGATTGCACATACTACATTTTTTTTTCATGGGTAGCCAAATTTAATATATTTTGCGAATTCATCAAGTTCCCTTTTTTTTCTTGAGTGCTTATAAAAGAGGATGGACATTGTGAATACAGACTACCTTGATATACATATACATGAATATGACGCAGACGAGGAATTAAGGGTAATGAGATAACATAATCTTGAAATTTATGTGCATATCTGTACCAACGAAATTTATGCAGATGAGTTTACACAAATATAGAGTTTTCATCTCTCTATTGTTTCATTCCCGCCAAAGTAAACCCATGATCAATACAACACAAACAAATTAAATACTCCACAATGTTTCACTCTGCAACTTGGTGGACTTGTAGGCTAAAAACTTAAAAGATGCAACTGAACAACTCTTCTTTATTCACTTGCTAGATCTTCTATCAAACCAATAAAGATCTCGCTCTAAACAATTTTTCTCTTGTTTTTCTATGCCTCTTTGTTTTAGCAAGTATGCTCAAGTTGCACGCTTAACTCTGACCCTTAAACCCTTAACCCTTGACTTTTACAATTTTCTCACAATGAGATTGATTTCTTGTAAACGTATAATCGGACCATTTAAAGAGCGCTTGTTAAGTTTAGAAACATGGTTGAATCACTAAACCTGACCCTATTCAAGATTGGCTTGAACCTGTCTCACAAGAAAATAATGTGCTTAGAGATTTCAGTTTTTATTTATGAACTTGACTATATTATAGGACTAGTGGAGTTGAAAGGTTTTAACCACTATTATCAGTTCTAACTAGAATGTGCCCATATTTTGGTGACAATATGCACAAATATTTAAGAAAGAAAGAGCGCCTCTGACACTGTGATCAAAACTAATCACATTTACAAAGAATGTGTACATTTTATTGCTGCATTGCAATGCAGTTTGGTCTGTTACCAACTTCACTAAAATGCAGTACATTCAAGAGTCTCGAACAACTCACTCCAACGTCTCTTTAGTCGTTTCTTGACACTTGTTTCATGTGTGCCATGTTTGGCTTTTTTTTCTTTAATTTTTTTTAATCCAACGTGATTTTATTTTATTTTTGTATAGACAACAAGGATTCAGGAAACAATCAGAAAACTCAGCAACATTCTGCAACAATTGCTTTGAGTTCTCCTTTTGAATATCAAGGACGTTTTGAACTTGGGCTAGGTCGATCTATGGTAAATGTTTGCAATCAAATATTTTTTGGTGAGCTGATAAGAAATAAAATTCAACGACTTCTATTTTATTTTGTTCTGCAGAATTGTTCAAATATTGCTTATGCTGATCCATGCTATGGCATGTACGCAACCTATGGAGCTCAATCAATGGTTAGGTTCTACATAGTATCTCGTTGTTTCTTCAATTATTTGTACCATCTCCAACTATGTGAAAATGAGAAAAAGATAACGATGTTGACAAAGACAAATTTGTTGTGCATCTAACTCACCAGTATTCAGATAATAAGATCTAAAGTAAAAAGAATAAAGGAAGAATAGAACACTGTCAATCATTTTACACCCTAGTGCATTATTAAACCTTTTAACTATTTGTTTATTTTGTTTTCTTTTGAAACTTGACAACTCATCATTGGTCTATTATTTCAAAATATATGAAAACTGCAGACTGTCACAATCACTCTCCTAATCAACTGTTAAAGTTAGATGGCAATAATTAGAATTTAAACCTCATAGTCTCATGTCAGTGTCTAGTTATGAACTAGGTCTTCGAAATATGAGACTCAAATTGTCACATAAAAATTCATTTTTGATTGAATATGGATTTAAATACCGGGTTGTATTTTGCTTGAACAAAGCATCATTCTGATTCTAAAATAAAATATAAAAAATATAGTTGTGGATTCAAATGGGCGAAACATAATTTGAATCATAAGACATAAAGATAATGTTTGGTTTGAATAATTTTTTTTTGTATTTTGCATTTTAAGTAATGTACTTTAAAATGCATGGGAGGGAGCAGTGAGTGAAAAACAATCGATTTGGATTTTAACATAAAAAATCAAAAATGACTTTTCTTTGTTTTCCGCCTTTTGGAAAATATCAAACACTATGTTTTCACTTCCTCTTCTCCTTTTAGTGAGAATGTGTAGGATTTTCGAATCTCTCATTTTCTCTCATGCCGTTTAACATACATATTTACAACAATACAAAACTCGTTTTCAATTCAAACACTACCTAAGATTTTCGTTGTCGTTGGTTATGAAATCATATCATTTGGACTTTATTGCCAGTTTAGCACATAGAGCATCCTCATACTGAGCCAATGTCTTCTTACAAAATTCTCTATTCTATGAATAAAAGCGTCTTATTTTTGGAATATGTAGACATGCTTAGAAGATGGATACTGATTTTTACCTCTAAGTTATCTAATAACTTTGTTGTGTTGCCATTTAAAATATAGTGCATACAGCAGACTTGAACAAATCAATAAAATTGACCCAAATCATAGAAAAGTTTTGTAAATCCTAATGCACTGGTCACCTCAAGAATTCTTTTACCTAAAGTGTTTTTTTTTGTCCATCATGTTTTTTTCAAATTTCATTGCAAAAATTATTTCCATCATAAATATTATTAATGATTCGTCGTTTATTTCCAATGAAGCATGGGCGCAAGCTTCTACCACCAAACATGACAGCTGATATGCCTATATATGTGAATGCAAAGCAATATCATGGAATTGTTCGCCGTAGACAGGCTCGTGCTAAAGCAGAGATGGAAAATAAACTCATCAGAGTTAGGAAGGTGAGTGCAAGCACTAACCGAACTAACAAAAATAAAACAGTGTGGCATCAATATTTCTCCTTTCTAATACCATCTTCAATCAATAAAGTTCCATTCTTTGTACTCATAGTGCTTTTTTAGTAGCCTCGGTAATATGAGATGCCTACCAGCCTTGGTAATATGAAAGGAATACAAGAGATTTTTTAGCTGTATTTTAAAGACAATACCGACACACATTTTTATCAAAAATCTTACGATTTAAATATGTTTCAGATCGAATCTCTCTCTTTACGATTCGATTTACATTCCGATTCAAACCCAATTAAAATTTCATGTGAGAAAAATTATTCAATCCTTAATAACATTCACTATTCAAATTTAATGTTTTCTAAACAAAATGAAAATGGAACAAAAAAGTTTGATTTGTAGGTTTAAATGTAGAAGTTTAAACATCAAAATCAATTTAAAAGTATGTATGAGTCTTAAAATTTGAATTTTTGAATGTGTGATTTATGATTTAAATCCTGTTTCGATTTAAAGTTTGAACTTTATAATTTACGATTTGAATCCCATTTTAAAAACCTTGCACATATTTGAATTGCCCACAAAATCAAACTTCACTCGTAAACTCTAGGAAAACATGTGCTTGAGAAATACATACTCTAGCTAGTTATCGCAAGATTGTCGGTTTCGCGGTTCAAACACGTGACATTCACAAAATTTCATAGCATTTAAAATCGTGTAACTCAAAGATGTGCTAAGGGATGCTTCAAAAGTGGGGTGTCATCTAACCTTCCTCAGATATATACATACATACATGATGTATGTATATGTATAACATACACACACACATACCCCTCCCCCCAAAACCCCTCCATGTGTGTATGTATGTATTTATCCATTGGCAACACTGACTAATTTTGTGTGATATATCCAGCCATACCTCCACGAGTCTCGACACCGCCACGCCATGCGTCGAGAAAGAGGAAGCGGAGGCCGGTTCCTAAACACCAAAAAGGAAAGCATGAAGCAAAACTCATCAAATGACGAAAACACCCGCAACGCACAGTTCACCAAATCGCCAAACTCCGTCCTCCACCACACCAACAGCGGAAACCTCTACTCCGGTAGCACCTCAGGATCTGAAATCTCCACCATCTATTCTCGAGACGACTCCGAACACTTCAACTTCGTCGACCACATCCATCCGTCCATCTACATGATGGGCGGAGGAGAACTTCTCAAAGTTTGACAATGTTCACTAGTGCTTGGGGATCCAGGTCACTTCGTACGTGTCCCCAAGGTTTTAGACAACCAGATAAAAGGAATTGGTTCTCTCTGGTTGTTTGAAGGCAAATCATTCTTGGCTTATCTGCATTCTGGACCTTTTCGTCTTTTTGATCCCTCCCCTTTTGGATTCTTATAAGATGAAAAGTTCTTTCTGTGGAAAAAAAGACTTAAAATATTTATAGCTTGTTATTTGAATTGTGTGTCGAAACTTAACTTGTGTGTGCAGTGTCTGAAGGCGCTGTCTGTTTGCTTTCATGTATTGTGTGCAAGGATTGCTCCTATGACTCATGTATTGTGTTGTATTTGACGATGTTGTTATTGTATAATATGAAGTTAGGAGTATTGTGCTGTTTGTAATTTGTTGGCCCTTTTTTTAGTTGTACAGTCCTGTAAGATCAAATAACTTTATTTGCTTATACATCCTTAAAACAGAATTATGATAACAATAAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020270236.1	1.6e-79	nuclear transcription factor Y subunit A-10-like
Swissprot	Q8LFU0.2	4.1e-24	Nuclear transcription factor Y subunit A-10
trEMBL	A0A5P1EQ82	1.1e-79	Nuclear transcription factor Y subunit

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06510.1	40.67	1e-29	127	NF-YA10	nuclear factor Y, subunit A10

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04293	AT5G06510.2	209	93	9	23	214	13	207	40.67	1e-29	127
AfisC8G04293	AT5G06510.1	209	93	9	23	214	13	207	40.67	1e-29	127
AfisC8G04293	AT1G72830.1	157	65	4	113	250	137	293	46.50	7e-29	124

Ortholog group

Species	Genes
Allium cepa	g155182.t1
Allium fistulosum	AfisC8G04293
Allium sativum	Asa1G01359.1
Arabidopsis thaliana	AT3G05690.1; AT5G06510.1; AT5G06510.2; AT5G06510.3
Oryza sativa	LOC_Os03g44540.1; LOC_Os03g48970.1; LOC_Os03g48970.2; LOC_Os03g48970.3; LOC_Os03g48970.4; LOC_Os07g06470.1; LOC_Os07g06470.2; LOC_Os12g42400.1; LOC_Os12g42400.2; LOC_Os12g42400.3; LOC_Os12g42400.4

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02045.12	CBFB_NFYA	Family	144	198	97.9	3.5e-28

Gene Ontology

Accession	Ontology	Name
GO:0000049	F	tRNA binding
GO:0000436	P	carbon catabolite activation of transcription from RNA polymerase II promoter
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001221	F	transcription cofactor binding
GO:0005737	C	cytoplasm
GO:0005654	C	nucleoplasm
GO:0016887	F	ATPase activity
GO:0006400	P	tRNA modification
GO:0009414	P	response to water deprivation
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009785	P	blue light signaling pathway
GO:0010262	P	somatic embryogenesis
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016602	C	CCAAT-binding factor complex
GO:0032993	C	protein-DNA complex
GO:0033588	C	Elongator holoenzyme complex
GO:0043457	P	regulation of cellular respiration
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	P	microgametogenesis
GO:2000036	P	regulation of stem cell population maintenance
GO:2000648	P	positive regulation of stem cell proliferation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08064	NFYA, HAP2; nuclear transcription factor Y, alpha	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network