result

Gene information

Detail information of AfisC8G04339

Location

Gene	Chr	Start	End	Strand
AfisC8G04339	chr8	803984088	803987782	-

Sequences

CDS

Protein

Gene

>AfisC8G04339
AAACGCTACCTAATTCAAATCAACTCAAAATGAAGAAAACCCATAAAAACAACAATCTTCTCGAATGCGCAACTCTAATATTGCCGTACCTCCCGCCACCAGCCCTCTCATCCCTCGCTGCATCGTGTCGCACCCTCCGTTCCGTCATCATCTCCTCCGATGCTTCCAGGAGAATCGAGAAATTTCCGATCCCTTTCATCAACTACATCGACTCCGTTCCCTACTCTTCCTTTCTTTACACGAAGTCCTCGTATGCTCCTAACAACATAATATTTGGATCCGGGTGCGATTGTATATCCAACTGCGATTCGGATCTGATAAACTGCGATTGTGTAGTGGGCGATGGTGGCAGTGAGTCTGGATTTGAAATGAGGAGGGAGTGTGGTGAGAAGTGCGGCTGTGGTTTGGATTGTGCGAATAGGATAACTCAGAGGGGGGTGTCTGTGAAATTGAAGATTGTTAGGGTTGTTAATAAAGGCTGGGGCTTGTTTGCTGCTGAATTTGTCAAGAAGGGAGTGTTCATATGTGAATATGCAGGTATTATTTTGATTTTTGTTGCTATAAGCTTTGGTTTTCGACATTTTTCCAGATGAAGATTAACTGTTTGTTAAAGTGCCTCACTAACTTTCAATTAATTATCAATGTTGTATTACTGGGGTTTGAAAGCGTTGGGATAACCAAGTCTGTATGCAGATTTTGAAGTATATGAAAAAGCTTTAATTGTGTTGGTATAATGAATACTTGATTTGGAAAGCAGATACGTTTGAAGCATGTATGACAATATCTTTTAAGCTGGAAAATCACCTTATAAGTTACATTTTTACTTGAAGTGTTGGAAAACAACTTAACATTTTGACATAAAAATAACAAATTAGTCGATGAGTGATAGTATGAAAAACTTGTTTATGACTTGTTTTATGTTTTACAACCAACTTTTGTTGAAACTTCAGCTTATGCATGCAAACACTCCTAATGTTTTGCTTTGTTTATACTACTTAAAAGTTATAACTTGAAACAAATTTTGAGCATGCTGTTGCCAAATGAGCTCTTATTTGCAACTTATTGTGCAGATATTGACTTATATGCAATTTTCTGAAAACGTGTTTGTGCCCTTTGTGAATTGCGTAAGCAGTTGTTTGCTGCCTATGACTTAGCAGCAACTTTTGATAAAAGTAGCGTCTATGTTGTTCTAAAAGAAATAGCGGTTAAACATGCTCTCTAAGTATATGCTATTCAAAATAGGGAAAAAAATAAAGAATACTCCAGTCATTGTTATGCATATCTAGTATGCATATCATATATGTTATTTATTGAACATTAAACAGGAAAAAAAAGACACTGCATGGTCGTCCAGTTGGTAATTACGAGATTGAGTGACAAGAGTTTATGAGTTTGAGCTCAGTAACAGTACTAGAAAAATAAAAATAAGTAAATATGATAGATTTTCTCTCAAGAGAAAGTTACCGAAATGCAAAAATAATGACTTCAGTCCATCGTTGTCAAAAATCTTAAAATCCTACAAATTAAACTCCGTTTCAAATCGAATCTCTCCCTTTACGGTTCGATTCATGTTCCGATTTAAACACAGGTAATACCACGATGTAGAAAAATCATTCAATCCAACAATCCACAATCGCAACTCTAATGTTTTCTAAACAAAATAAAATCAGAACAAAAGAGAAAATGAAGTTTTAGGTATAGATGTAGAAGTTCAAACATGACATTCAATTTCAAAGTGTGTGCAAACCTCATAATGTGATTCATTTAACTCTACGATTTACAATTTAAATCCCGTTTTGATTTAAAGTTTGAACTTTCCGATTTAGGATTTGAATCCAATTTTGAAAACCTTGCAGGCGAATACCTAACAACGGAGGAATCAAGAAAGAGGCAAAAAGTGTATGATGAGCTTGCATCCAAGAAACTGCTATCTCCAGCACTAATAGTCATAAGAGAACACCTTCCATCTGGCAAATCATGTCTAAGGGCCAATATCGATGCAACCAAAATTGGAAATGTTGGTCGGTTCATCAATCACTCTTGTGACGGTGGCAATTTATCTGCTGTTTTGGTTAGAAATACCGGTTCGTTACTCCCCAGGCTGTGTTTTTTTGCCGCTGTTGATATAAATGATGGTTCGGAATTGACATTTAGCTATGGTGAGGGTAATGTGAGGTCAAATGGTTTGCCTTGTTTCTGTGGAAGTGGCGATTGTCGTGGTGTGCTGCCTTCTGAAGATACCTGATTTCGTGCTTTTTGTTTAATAATTTATAGGTGAGAATTCTTATTTTAAAGTTGATTTTTTAATATTGTGTCCGTTTGGCAAAGACTTCCCTGAAAACTACTTAAAAGTAATTTTGAATTATAACCCTAAAGGGTAACTCAACTGATCAAAGCATTGGGATGTCAAATGAGAGATGCAAAGATCAATTACCAATGATAGCATAGAAATCCCTTTAATTTACTTGGAGTATGTGTTGTTGAGTCAACACATACTTAATTCATTGTAATGTTTACAAGTTGTTAACCCTAAACCTGATTTATTTGAGTGTTCAAAACAAAACAAAAAAGATTTTGAATTATGGCTTTTAAGTAGTTTTAGGGGAATAGGAAGAAGTGCAAATGTTTGTTTAGATAAGTTGATAATTTGTGAAATATAATGTTAAAATATGGAATAAGTCATAAGCGAGTTTTTCTTTGCTTGTGACTTGTTGATTTTTTTTGCTACTTTGAAGTAAACATTTAAGGTGTCAAACACTTCAAGTCGCAAAAGCAACGCATAAGCTAATTTTCCTAGTTATAACTATTGTCAAACTCGCTACATCATTCTGGTACATTATTTGCATTAGGCACTGTTTTTCAATCTGAAACATTCTTGATTTTGATATGGAAAATCAACAATCTACATCTTTGATTTTTTGTGAAAACAAGTTCTTGGTATTTAAGAAAGATTGCTTTAATGGCATTGTAACATATTTCGCTGTTGCAGTCAAGTTTCTATGCAAAATATATCATATTTCATAGTGCTAATAATGATTCAAAACTTCTGAAAAGTGCTAGTGGTTATTGGCGCTTTTACGACAATTAATGTCTTCTGTAGTAAACTATAAATCTGTGAAAATAAATAATGCTAATTTGGTATATTTCAAAATATTTTGAAGTGTTTAGCTAAATTGGGGAATGCATTCATATCATCATATGCTCTTCCTTATTCAGCTTACAGGGGAGTTTTTTGTTTCATTCATAGGTGAGGTAGATAATCGATGGCCATAACTTTGCTATATTTGTGATGATAGAAAAAAAAGACACATTATTTAACGTGAACTTTTCTCACGAATTTTCACAATCAGTTGTTTGCAGATTTGAAAAGGAAACATAAATTGGACATAAATCTCATGGTAACTCATATTCTTCTGTCAGTTTTACATCCGTTGCAAAGCCTCGGATCAACTTTGATCATGTTTTATAGTGTTACAATACTCCCTCAAAAGCACTGGGAAAAGAAAGTGCAATTTTCACAAGATTTAATTCAGCAGTAGAAGCTACTTATGTCAATCATATCAGATTTTTGATGAGGGTTTTAAGTATGCTGTACGTATAAATGGTGCATTGTGTTACTACTGTTCTATTATTATTACTATTATTAATTATTAACACAAACTCTTTTTAATTCTTCAATTGATGCTTGAAAAATC

Functional annotation

Database	accession number	e-value	annotation
nr	TVU34942.1	3.1e-89	hypothetical protein EJB05_16800, partial
Swissprot	Q9SRV2.4	6.7e-65	Suppressor of variegation 3-9-related protein 3
trEMBL	A0A5J9VF93	2.2e-89	Histone-lysine N-methyltransferase SUVR3 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G03750.2	49.40	1e-77	286	SDG20;SUVR3	SET domain protein 20

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04339	AT3G03750.2	332	124	7	8	298	26	354	49.40	1e-77	286
AfisC8G04339	AT3G03750.1	332	121	8	8	298	26	338	45.48	2e-66	249
AfisC8G04339	AT2G23740.1	187	99	5	117	293	1195	1374	37.97	3e-27	119

Ortholog group

Species	Genes
Allium cepa	g92518.t1
Allium fistulosum	AfisC8G04339
Allium sativum
Arabidopsis thaliana	AT3G03750.1; AT3G03750.2
Oryza sativa	LOC_Os01g56540.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF05033.13	Pre-SET	Family	46	131	33.1	6.3e-08
PF00856.25	SET	Family	150	271	61.7	9.6e-17

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000785	C	chromatin
GO:0003677	F	DNA binding
GO:0004519	F	endonuclease activity
GO:0006303	P	double-strand break repair via nonhomologous end joining
GO:0006351	P	transcription, DNA-templated
GO:0006996	P	organelle organization
GO:0007275	P	multicellular organism development
GO:0008283	P	cell proliferation
GO:0010452	P	histone H3-K36 methylation
GO:0010468	P	regulation of gene expression
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0018024	F	histone-lysine N-methyltransferase activity
GO:0018027	P	peptidyl-lysine dimethylation
GO:0044451	C	nucleoplasm part
GO:0045786	P	negative regulation of cell cycle
GO:0048584	P	positive regulation of response to stimulus
GO:0051128	P	regulation of cellular component organization
GO:0051568	P	histone H3-K4 methylation
GO:0090305	P	nucleic acid phosphodiester bond hydrolysis
GO:1903047	P	mitotic cell cycle process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11433	SETMAR; [histone H3]-lysine36 N-dimethyltransferase SETMAR	EC:2.1.1.357	Lysine degradation	ko00310

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network