result

Gene information

Detail information of AfisC8G04439

Location

Gene	Chr	Start	End	Strand
AfisC8G04439	chr8	822914665	822919232	-

Sequences

CDS

Protein

Gene

>AfisC8G04439
GAAGAATTGATCCCGTTCGAGACCACGGTCTCTCCGCACTTCATCTCCGGTTTCCCCAATTTTCCAAACAACACTATCCTCTTCAAACATGAAAACCCTAACCCTAATTCTAACAGTGCAAAACCGCTCGTATTTTGTTTCTTACCTGGAATCTACGATGAAAGACAGTTGGGACAAATAATGAGAAGAATTACAACAAAGAGTGGATGAATTATGTTTTATGAAGAGACGAACTTGAAGAACTAAGGTAGATTATATCTTATGAATCTATGATTTTGATCCTGAACTATAGTTGCATATTATGTTTTGATCCAAGTACAGAGGATGCAGTTCATCAAGAATTTTTTTATACTTGTAGTTTTGCTGCCATATTTCAGTTACAACAGTGATGACAATTGCACTGTAAATTTGCAGTTCTAATACGTGGAAATTTTCTTTTCATTTTCGTTAATTTTTTTGACACGCTTCTCAAATGCTGCAATAATTCCACTTATTATGTGGAATTGGTTCCAACTCAATCTTATTTATTGACTAAGTTTAGTTTGTTTATTGATTTCTCTCGATCAAGTATACTGGATCGACTAATATTCTTCTTTTTTAGTTGGTATATTCTAGCAATCTCGTTATTTCAATGTATAAATCATTGAGTATTTAGTGAAAAATGATATGACAGTTGACTTTTCAGTGTGCAGCATGGTACCTTACCCTGTTATTTGCATATATATATATTTCATAATCATATTACAATGCAATGTGCAAATCGATAAATAACATAGACACAACCGTACGTATCAGTTCTATTGTACATATATAAAGTCATCAAGCTTGAACTCAGTTGAAGGCATTCAAAGATTAGTCATTTGCTTTCTTCATCTCTCTTTCATTTACTTTCAAGTATTTATACCCTTCTCCTTCGTTTTCTTAATCTATTTCTGAAAATGGGTGCTTGTCCTTCAAAACGAGATAAAAAAGTGGACAATAATGGAAATCAGGCCAATTCATGTTCAGGTACAGGTATTATCATTTAAAAAGTCATTAAAGATTTTCCATGTTTGCCCTTGTTTATGATTTGTTAATGTCTAAAAGTTTTTTATTCTTTTATTTTCTTTCAAGAAACTCATTTATATTTCACTTTCTGAAAAATAACATGTGATTTAAACATAAACAATGATCTTGATGAAACTTTTTTCAGGTGTAATGTTTATTTTTTTTTTAGCAGCTTTATCGAAATCTTATTTTATTATTTGACAACTTTTTTATGCCATTGCTGAGTCAAATCGTATGAAATATAAATTTATCTATTCTCCTTATATGTATTTAGTTTCATTTCTAAAATGAGCTAACTCAGTTTTTTCTTTATGGTATTTCATCAAGAAATCCCTGACATTTTCATTCTAGACAGGAACATTTTCTTGGGCAGTATAAAAAAAGTGTAGGTGCTGGGAATTAGTTAAACAAAAATGTCCTTTCCTAAAATTATGATAACAAAAGAAATCCATTCGGAGCTATTCTAGAATCATCAACTGTAACTGTATTGATTTTAAACTGAATTTTTAAGCTGCAAGTATTTCTTCTTTTTAGTAATTTTACTGCACATGCATACGTTACATGTGTCATTTGTACTGTTAAACCTTACACGTAAACAAGAAACATATTTCTTGGGTTTTTACATAGACACTATTGTTTCAAGATATTTTTTATTTATTTATGTAAACATATATAGAAACCTTTAACATTAGAGAGGGAAAACATATTTCTTGGATTTTCACTTAGATAATTTCATTTCAGGATTTTTTGTTTCTTTTTCTTTTTTCTTTTATTTCTGAAAAAAGAACCATTCCACAAGTTACTTTGGTTTTATTGATAACAGCTGATTTGAAGTATTTGTAATTTGCAAGAACTTAGGTGTTGCAATTACATTTATTCTAACCAAAATACTCATTTATAAATTATAAATAATTTGTATACTTCATTTAAGTCCTATATATGACTTGCTAGTAGAAGTTCGAAGCCATGTTAGTAGAGGTTTGAACTTTGAAGCCAAATGCTCACTTTAGGTCTTTCTCATACTAAAAACAAAATTCTTTACTTCTATTTTGATTCAGCAGACAGTGGCCACAAATATTTTATATTGCTGACTTTTATTTGGGTTCAGCAGGCAATGATTCCTGGATGTTCTCTTTGGAAGAACTGGCTGCTGCCAGTAATAATTTCAGTGACGCTTGTTTATTGGGAAGGGGAAGATTTGCTTCAGTGTTTATAGGAAGATTACAGCGCACAGGCCAGGTATACATAAAGCAATGTAGTGTGTCACGGAACATTGAAGTTTATTTCTGCTAGGAAACTAATTAATCATCAACATGCATAATAATATATAGCCTTTTGTCAATAGATTGTGGCTATAAAGAAGCTTCATAACGCTGATGGTCATCAAGGTTTTGATGCATTTCTTAATGAAGCGGTGATATTAATCGAGTTTCGTCATCCTAACCTCGTTAGCATGATTGGGTTTTGTGTCGATGGTGCAGAAAGACTTTTAGTGTTAGAGTACATGGCTCGTGGATCACTGGATGACCATCTCTTCAGTAAGTACCACATTTGTATTCCAAAATAAGCATAGAAAATTGTGATGATTATGCTTATTCTATTACATGATGTAAATAATACAATTTCAATTCAATTCGAAATTCTTGAAATTTTATGGAAGTTTTTCCATCATTAATTTGTGATGCTGTAGATATTTTATCAATGACAACATGATCTTTGTAGATTTTATTTTATTTTATCAATGACAACATGTTCTTTGATTTCCATAGGTCGTAACCCAAAAATGGTGCCTCTAGATTGGAACACACGGATGAAAATAGCTTTAAGTGTTGCCAGAGGATTAGCGTATTTGCATCTTAATCAGGATCCACCAATTATACATAGAAATTTGAAGTGCTCAAAAATATTGCTTGGGGTGGGGTACCAAGCAAAATTATCGGGTTTTGGATTGGCTAAAGAAGGACCAGCTGGTGATCAAACTCATGTTACAACATCAGTTGTGGGAACAAGTGGATACATTGCCCCTGAATATGCAAGAACGCGTAGATTGACCGTTAAATCTGATATATATGGTTTTGGAGCAGTGCTTTTTGAAATTATTACTGGAAGGAGATTCAATGAATTCAATAATGCAGAGGCTGAAGATCTTGCTGCTTGGGTATGTGCTTTCTTATCATGCTAGTTGTCTTTATATATATGTATGTGTGTGTGTGTAAAGGTTGCCATTAGATGTGTTCATAGGTATGATGAATGCAAATAGGTAATGTTCAACACTACTAGCAATAACTCATCCCAGTTAACTGTTGCCTAGTGATGAGAAAATTGCAGGAATTATACCTCTTATATTGCAGTCTAAAAACATACAAAAAACAAATGATATTGATTGCGGATTATAAATTATAATCAATTAGAATGTAAGCAGAAGCTATCATACTTGGATTCTGAAATTGGTGACAAAGTTTTGTGAGCTCAAATTGTCGTGGAATCTGATTTTTAACACCGACCATATCTGAGGGTAGGTTGGTTGCCATATTCTAGTATTGTTCAACCTGTAAAAGCTCAAATTCAATTCTGATAAAGGAAATAAATGATTATGGAAATAATAAAATCTGATTTCAAATCGAATCTCTCCAAATACGATTCGATCTTCGAACTCCGATTCAAAAGCTTACTTGAAATCACAATTGAGAAAACAAATTAAGTTCAAGTTCGTCTATAGAAGCTCAAATACTTTCAATTCAAATAATATAAACTATATATTGTTAGGGAAAGAAGAAATGCATTTTTGAAATATACACTCAAAATATGTATCTTTTAAATATACAATATAAATCCATTTTTGATTTAAAAATTGAATTTATGGTTTATGATTTATAATTTTGTTTATGATCTATTCCAACTTTTAACCCATAGAAAACTACTATCTGTATACACTTAATCCTTAGTCCAGTCATAACCATGATATAGGTGAATGTGCTTTGGATATACACATGCACATGCACACTGGATATACATGAATACACATACACATGCACACTAAGCTTATTTCCTCATGGTTGTTTATCTACATAGACATAAATGTATACTTTTAACATACATTATTTGTATCATAATTTATATTGCAGACTCCACCATATGTAGACCCTGAGAATTTTTTGGCCCGTATAGCAGATCCCTCGCTTCAAGGCAAGTACCCAAGACATGAATTTGCTAAAGTTGCAGCTTTAGCCAAAAAGTGTGTGCAGGAAGATCCAAATGGAAGGCCTCCAATAGATGAAGTTGTTTATCTACTCACTAACCTCTCAGATGCATCAATGAGATAATGTAATAAAAACGATACTGAAGATTTGGTATTCAGATTTTATCATTCTGCACCATTAGTTGTACATAAAATTTAGACAACCATTTTTATGTTTTTTTTTTCTGAATTGCAACATTCTTTGTGATGAATTTTTTGTGCTCTTTTGTGGCCAAGTAAATGAAGTATAGTTGAGCATCATATAAATTTTTATGAATGCAAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_021624237.1	2.8e-82	LOW QUALITY PROTEIN: probable serine/threonine-protein kinase PBL7
Swissprot	Q1PDV6.1	1.9e-80	Receptor-like cytoplasmic kinase PBL27
trEMBL	A0A5N5FME4	3.4e-82	Serine/threonine-protein kinase PBS1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G18610.1	52.74	4e-81	298		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04439	AT5G18610.2	292	136	2	2	292	71	361	52.74	4e-81	298
AfisC8G04439	AT5G18610.1	292	136	2	2	292	71	361	52.74	4e-81	298
AfisC8G04439	AT5G02800.1	293	136	3	2	292	61	351	52.22	3e-79	291

Ortholog group

Species	Genes
Allium cepa	g233121.t1
Allium fistulosum	AfisC8G04439
Allium sativum	Asa6G03582.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	20	286	156.5	6.7e-46

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0004674	F	protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009941	C	chloroplast envelope
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0046777	P	protein autophosphorylation
GO:0071323	P	cellular response to chitin
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network