result

Gene information

Detail information of AfisC8G04681

Location

Gene	Chr	Start	End	Strand
AfisC8G04681	chr8	860461171	860462908	-

Sequences

CDS

Protein

Gene

>AfisC8G04681
TAAACGAGCACCTTTCATGACCTTCTTGTATATAAACCAAGTTCACAATTAGTGAGGTATTTGAATCAACTGCTATGGAAATTAAAAATGATTGCTTAGAGAAAAAGAATGATACTGATGAAGAAAAGATTGCTCTTCCAGGATTCAGATTTCACCCTACAGATGAAGAGCTTGTTACCTTTTATTTGAGAAGAAAAGTGGAAAACAAGTCTATTTCTATAGAGATTATAAAGGAGATTGATGTATATAAGTTTGATCCTTGGGATCTTCCAAGTATGTTCTTTTATTTCACTTTTTTGATTTGTATTTGCTTTTGTTTTAACTCTTAATTCATACAAGGGAAGAGAAATTAATTTGCATATTAGAATGATATGCTTAAACCATGCACAATGAAAACAAAATTTGAGTTAATCATTCTACACAGCCTCTCCAATCAAACATATAAGCATGTAGAAGATGAAGATATATTATGAAAATGCTTGAAAAATGAATCATTAAAGTAATAATTAAAAATATAAATCAACATTCTAACAGTGCAATAATTATTATATGTTTAATTCAAGTAGGAGTAAGTTCAGTGGGAATGGAAAAAGAATGGTACTTCTTCAGCCTGAGGGGAAGAAAATACAGGAACAGCATAAGGCCGAACCGGGTTACGGGTTCTGGATTCTGGAAGGCGACGGGGATAGATAGGCCCATTATGAATTCAGGATCCGATAACAATGACACCTGCATTGGGTTGAAGAAGTCCTTAGTGTATTATATCGGAAGTGCAGGAAAAGGAAAGAAGACAGACTGGATGATGCATGAGTTTAGACTTCCTTCTAATATAAAAGATACTGATACGTGTTCTCCTAGCATGCAGGAAGCGGTACTATACTATATATCTTCATGTCGTTATCATATTTATTTCAATAGCGTCATAATTAAGTGATTTGTATCTTGCAAGTCAATGTTAAACGTTGGAAAAGTAATCTTTGTGATTTTTCTGAAGATTTTCCAATGTTGGACACATATATTGTCTTTAGCATAAATTTCTGATAATTAAGTAGAATTTGTCATTGATATTGTTGAATTCAATGACAGTAATGTGATATAAATTTGCAGGAAATATGGACAATATGCAGGATATTCAAGAGAAACATATGTTCAAAGAAAGCATACAAACAAACAGCAGCATCAACTTCAATACAAACTGCAACTGATTCAAGTTCAAAAACAAACAGTAGTGTGGACTCTGATCATACAAACAATCAAGACCAAAACAGTGTTCTAAACCCTAATCAAATATACGCAGCACAATACATTAATCAGCCTTTCATATTGCACTCTCCAGTATCAACCACAAACTCACATCAGTATTCTAATAATAGTTATATGAACATTTGTGGAAACTGGGATGAACTTGGAAGAATAGTTGACTATTGCATGATCGATCATGCCACTACAGCTGCTTCCCAAGATTCGCCTTATTGCTAACTAGTTTGTATTTCAACCGCATTTAGCATGTGCTATCTCTTCATTGTGCTATATTAGCATATATTATATGTATTTGTATGGTTCTCCCGTTATGTAATTTAGTAATTATATGGTAAAATTATGCTTTCATTTAGAATGGTTAGTGCTTTGGTATGTTAGATGAGGAGGTATAGGTATGAAGAAAGTTTGTTCTCATATAGGAATGTATGCATGTATATATGATATTTGAATAATATGAATACTATATGCTTTGATGATA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020258282.1	2.2e-79	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55.1	3.7e-68	NAC domain-containing protein 42
trEMBL	A0A5P1FAN5	1.5e-79	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G43000.1	54.21	3e-76	281	ANAC042;JUB1;NAC042	NAC domain containing protein 42

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04681	AT2G43000.1	273	104	8	11	273	9	270	54.21	3e-76	281
AfisC8G04681	AT3G12910.1	289	118	10	15	276	16	297	47.40	1e-62	236
AfisC8G04681	AT1G26870.1	237	101	8	9	236	10	237	49.79	7e-57	217

Ortholog group

Species	Genes
Allium cepa	g525426.t1
Allium fistulosum	AfisC8G04681
Allium sativum	Asa1G01052.1
Arabidopsis thaliana	AT2G43000.1
Oryza sativa	LOC_Os03g56580.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	22	151	88.1	4.7e-25

Gene Ontology

Accession	Ontology	Name
GO:0001666	P	response to hypoxia
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005992	P	trehalose biosynthetic process
GO:0006561	P	proline biosynthetic process
GO:0008361	P	regulation of cell size
GO:0009414	P	response to water deprivation
GO:0009507	C	chloroplast
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009644	P	response to high light intensity
GO:0009718	P	anthocyanin-containing compound biosynthetic process
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009751	P	response to salicylic acid
GO:0009825	P	multidimensional cell growth
GO:0009835	P	fruit ripening
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009962	P	regulation of flavonoid biosynthetic process
GO:0010029	P	regulation of seed germination
GO:0010120	P	camalexin biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0042538	P	hyperosmotic salinity response
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043424	F	protein histidine kinase binding
GO:0043565	F	sequence-specific DNA binding
GO:0045770	P	positive regulation of asymmetric cell division
GO:0045995	P	regulation of embryonic development
GO:0046982	F	protein heterodimerization activity
GO:0048103	P	somatic stem cell division
GO:0048317	P	seed morphogenesis
GO:0048527	P	lateral root development
GO:0048829	P	root cap development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0080060	P	integument development
GO:0090400	P	stress-induced premature senescence
GO:1900056	P	negative regulation of leaf senescence
GO:1900057	P	positive regulation of leaf senescence
GO:1902074	P	response to salt
GO:1904250	P	positive regulation of age-related resistance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network