result

Gene information

Detail information of AfisC8G04754

Location

Gene	Chr	Start	End	Strand
AfisC8G04754	chr8	871301961	871303160	-

Sequences

CDS

Protein

Gene

>AfisC8G04754
AATCACTCCGTCATTTCATTTTATTCCTTTCCTCTTCCCAATCAAAACCAACAACCAAGACCAAGGAAAAAACATGGAAGACGTTTCGGCTGATATTCACCTCGTTCTCGGCCTGGCCCAATACAGCAACGGCAATAACCATCACAATTCTACTTCTACCTCCATCAAACTCAATCACGCGTCAAACTTCCAAATCGCCGAAGCTCCTTCTCTGACCCTCGGCTTACGCAACGAAGTGTACGGCTCTCCTAAAGCAAGCACCGACTCCAATTCCTCCATTAAGCGCGAGTACGAGGACATGAAGGAGTCGCGATTGTCGTTGTCGAGGACCAGCGACGACGATGAAGCAACTGCGGCCAGGAAGAAGCTCAGGCTCAATAAAGAACAGTCCGCTTTACTGGAAGAGAAATTTAAGCAGCATACCTCTCTTAATCCTGTTAGTCTTCTTCTTCTTCTTCTTCTTCTTTCATTTATTTTTTGTTTATTCAGATTTAGAATATTTCCTGAAATGATATTTTTTGCAATATATGTAGAAACAAAAGCAAGCACTTGCAAAACAGTTGAATCTTCGGCCACGCCAAGTCGAGGTCTGGTTTCAGAACAGAAGAGCAAGGTACCATTGATTCATATATAAATCTTACTATGCATAGAAGATAAAGTACTAAAAGAATGAATATGTGTATGTAGAACAAAACTGAAGCAAACGGAGACTGACTGCGAAGTACTGAAAAGATGCTGCGAGAAGCTGACGGAGGAGAATCAGAGGTTACAAAGAGAGGTGGAAGAACTGAAGTTGATCAGAAGTACGACGTCGACGTCGCCGTTGACAATGTACATGCAGATGCCGGTGGGTCCCACTGTTACTATGTGCCCTTCTTGCAACTGTGTTCGTGGCGCAGGCAGCGAAGCGTCAATCATGGCTGCTGGTAGTAGGAGTAGCCCTGCTACTAGTCCTTTTGGAAGACCGACTAAATGCTAATCGCTGATTAATTTTAATCGTAATTATAATTACTTTGATTAATGATATATATATATTGTACGTGTTGTATACTTTGGATGGAGGCAACCTTTTGACTTTTTTAGCAGGGTGTCTCTGGTCACGAATTTAATTAGCTTGATTTTAGATGAACCATATATATGTTAATTAGTATATTCGGGTTGAAACAGAATGGAAAAGTAATTATGTTGGTTGTGTATATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_004511801.1	3.6e-43	homeobox-leucine zipper protein HAT22
Swissprot	P46665.3	1.2e-40	Homeodomain-leucine zipper protein HAT14
trEMBL	A0A1S2YY60	2.6e-43	homeobox-leucine zipper protein HAT22

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06710.1	56.04	2e-48	189	HAT14	homeobox from Arabidopsis thaliana

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04754	AT5G06710.1	182	65	5	47	227	147	314	56.04	2e-48	189
AfisC8G04754	AT4G37790.1	241	87	7	3	212	4	235	47.30	5e-48	187
AfisC8G04754	AT2G22800.1	225	96	5	3	212	4	222	48.00	7e-45	177

Ortholog group

Species	Genes
Allium cepa	g493344.t1
Allium fistulosum	AfisC8G04754
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	96	150	56.1	2.1e-15
PF02183.15	HALZ	Family	152	183	40.5	2.1e-10

Gene Ontology

Accession	Ontology	Name
GO:0000123	C	histone acetyltransferase complex
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0008283	P	cell proliferation
GO:0009506	C	plasmodesma
GO:0009585	P	red, far-red light phototransduction
GO:0009641	P	shade avoidance
GO:0009733	P	response to auxin
GO:0009735	P	response to cytokinin
GO:0009826	P	unidimensional cell growth
GO:0010015	P	root morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010218	P	response to far red light
GO:0010321	P	regulation of vegetative phase change
GO:0010484	F	H3 histone acetyltransferase activity
GO:0010582	P	floral meristem determinacy
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016573	P	histone acetylation
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0043621	F	protein self-association
GO:0048467	P	gynoecium development
GO:0080127	P	fruit septum development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network