result

Gene information

Detail information of AfisC8G04758

Location

Gene	Chr	Start	End	Strand
AfisC8G04758	chr8	873165459	873167006	+

Sequences

CDS

Protein

Gene

>AfisC8G04758
CTTTATTAAGCTCAAACCTTCCATTTCATCTTAGAAAAAAACTATAACAACAAGAAAAAAAAATTAAATTCAAAAATGGGGAGAGCTCCATGTTGTGATAAAGCAAATGTAAAGAAAGGGCCATGGTCACCCGAAGAGGATGCTACTCTTAAGAATTATATCGAGAAAAATGGCACCGGAGGCAACTGGATTGCTTTGCCACAAAAGATCGGTATGTCACATATCCTTTTTCTTTTTCTCAGTATTCTAAGAGATTTAATTTGTGTTTCAATATATTTTGGTTTCTTTATAACAATTTCTGCTATTAATTGATTAATTTGATTGTGATTAAGGCCTCAAGAGGTGTGGCAAAAGCTGTCGTTTAAGATGGTTGAATTACCTTCGGCCTAATATAAAGCATGGAGGCTTTTCTGAAGAAGAAGATAACATCATATGCAGCTTGTATATCAGTATAGGGAGCAGGTAATTTTCACAGTAATAATTTTTTTGAATTTCATGAATAAGTTTCAATAATTTACTACTTTTTTTTTCTTCTTGATCTATCATGGTTCAATAATTTGATTAGAACTTAGCTTTTGAAAGTTAGGTTTAGAATAAGACCTATCATTGCCAAGTACTGAAATTGATTTTATTTTTATTTTAATATCATGTGTAGGTGGTCTATAATTGCAGCACAATTACCAGGAAGAACTGATAATGATATCAAGAACTACTGGAACACAAGACTGAAGAAGAAAGTATTAGGATGCAAACCTCGTAAAGATCAGAATCAAAGTCGAAGATCTAAAAGAGATGAAAATGGAAGCACTCCTTTTGCTACTATAGCAACTACTACTAATGGTGATGACATCAACTACACTACCAGGCCTCATACATACTGGCCCGACCCGAACCACTTGCCCAATCCATACCCGTTGATGAACCAACTGGCTGATCAGCATCGAGCTATCGATGAACACTCGTCTATTAGAAGGCTACTAATGAAGCTTGGGGGGAAATTCGCAGTTAATGATGGTGCACAGATATTTGCAAACAATCAAGAAAGCTTAATGATGCAAAATCAAATGAATCAGACGAGTTCATTAGTTGCAAATGATGGATTAATTGCGAGTTTGAACCAGGAGTTTAGTGCTCAGATGGAGTCGTATGATGATATGTTGATGAACTGCAATTTTGTGAAGTTGGACAACTGCTCCTTTTTTGAAGGGACTGGTAATGCTAGCAATGCATCGAATAACACGAACTGGAGCGATTCTAGTATGAGTACAATGGTCAATTATGAAGTGCCGATGATGATGACGAACTTTCAGTCGATGCAACCAAGTTTGTTTGAAGAGCAAGTGCAGCCATAGCACATAGTAATTTTACTTTTTTTATTTTTTTTATTTTGATTTTACTTTATAGTTCTATTTAATAATCGTGTTGTTGTTGTACATGGTTATGTTGGTTTGTAGCATGGATTGGTTATGTTGTTGGATTTAATTTTCTAAAACAAAACATTTTATCAGATATTAATAAACCTCAGAGAGTGATTTTCATTTTTATGCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255135.1	3.3e-81	transcription factor RAX1-like
Swissprot	Q9M2Y9.1	1.6e-64	Protein REGULATOR OF AXILLARY MERISTEMS 3
trEMBL	A0A5P1F8Q0	2.4e-81	Transcription factor RAX3-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G65790.1	86.92	3e-66	248	ATMYB68;MYB68	myb domain protein 68

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04758	AT5G65790.1	130	16	1	1	130	1	129	86.92	3e-66	248
AfisC8G04758	AT3G49690.1	125	12	1	1	125	1	124	89.60	1e-65	246
AfisC8G04758	AT5G57620.1	119	9	0	1	119	1	119	92.44	5e-65	244

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	62	55.1	5.7e-15
PF00249.28	Myb_DNA-binding	Domain	69	111	41.3	1.1e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008285	P	negative regulation of cell proliferation
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009785	P	blue light signaling pathway
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0035987	P	endodermal cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0045597	P	positive regulation of cell differentiation
GO:0048226	C	Casparian strip
GO:0048658	P	anther wall tapetum development
GO:0051555	P	flavonol biosynthetic process
GO:0052545	P	callose localization
GO:0055046	P	microgametogenesis
GO:2000021	P	regulation of ion homeostasis
GO:2000067	P	regulation of root morphogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network