result

Gene information

Detail information of AfisC8G04843

Location

Gene	Chr	Start	End	Strand
AfisC8G04843	chr8	891019973	891021110	-

Sequences

CDS

Protein

Gene

>AfisC8G04843
CTCTTCTCACCCCTGACCAATCGACAACTTTACTCCACCCTTTCATTTCTGTCCTAACCCTCGCAACCCAATAACAAAACAAAGGTGAACAATGCTTCAAGAACCACTAATGAATACCGCACTCAACAATCAAGAAAGAAAACTATCCATCCCAGCACCACAGCTTACTAACAGCACCCCCTCTTCTTCCGAATCAGCACCACTACAGGAGAAGCTTCAGTGCCCACGGTGCAACTCAAAGAACACCAAGTTCTGCTATTACAACAACTACAACCTGACCCAACCACGTCACTTCTGCAAAACATGCCGCAGGTACTGGACGAAGGGAGGTGCCCTACGCAACGTCCCTATCGGAGGGGGCTGCAGGAAGTCAAAGCCTTCATCTTTGGCCCATAAAGCCCGGCCCGTCCCCGCATCATCAGATGACATCATGCCTCTGGGTCTAGGGACACATAACTCTCATTTGCTGGATTTGCTAAAAGGGAGCAGTAACCACTTCATGCAAAATCCTTATAACGTGAATTTGAACTCGTTTAGAGTTGTTAAGGAAGAAATAGTAGATGGGAATTATGGTTACCAGCAGCAAATGCCGACTAGTTCAGGAGTTCAAGAGCTCTATCAATGGCCGCAGAGGTCCAACAACTACAGTGGCCAGTTTGAGAAGATGACCGGAATTAGCAGTGGGACTTCTACTGCTAATTATAATGATTATTGTTCATCTCTGGTTTTGACTAGCAGGGGTGCTGAGTCTATTATGGATCAGGTTAATCCTCTGCATAATGGAGATCTTGGATCATGGATTAATGGTGCAGGGATGACATGGTCTGATATTTCAGCAAGCAATGGCCGTTTTCATTGATGAAATTCTTAACACTTGACCTCTGTAGAAGGGGTATGATATGGTTAGTGTATTTTTAAACATGATATGGTCAATTATGTACTGATTAAGGGGTGGCAAAATATGATGTCAGGTACTTTGTATGACTTAAACATATTTTAACTTGTGTCTTATTTTCAGATTATTAGTTGGTAGTGTTTTAATTGTGACTAGTGAGATATATTTGTAATGAAAAAGTAAGGAAAAATGGGATAGTGTGTATGTTGTAAGATTTAACCATGTGTTTGACAAATCCTCTTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_012079164.1	8.6e-32	dof zinc finger protein DOF5.3
Swissprot	Q9LSL6.1	1.1e-26	Dof zinc finger protein DOF5.7
trEMBL	A0A836DY46	3.6e-32	Dof zinc finger protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G65590.1	77.94	1e-28	123	SCAP1	Dof-type zinc finger DNA-binding family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04843	AT5G65590.1	68	15	0	30	97	29	96	77.94	1e-28	123
AfisC8G04843	AT5G60850.1	76	18	1	40	115	49	120	71.05	3e-28	122
AfisC8G04843	AT5G60200.1	107	33	4	9	111	30	128	57.94	4e-28	121

Ortholog group

Species	Genes
Allium cepa	g314691.t1
Allium fistulosum	AfisC8G04843
Allium sativum	Asa1G00924.1; Asa1G00925.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	40	95	112.9	5.2e-33

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0010052	P	guard cell differentiation
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1902066	P	regulation of cell wall pectin metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network