result

Gene information

Detail information of AfisC8G04865

Location

Gene	Chr	Start	End	Strand
AfisC8G04865	chr8	894703956	894707762	+

Sequences

CDS

Protein

Gene

>AfisC8G04865
TAACAACCCCAGCCTTTTTCATTCTTTAGAAATCATTTACCACTCATGACCTAATAATTATTCACACTATGCTCCACCTTTCACTTCATACAACTATCATCTCCTTTACACTAAGACATGGCAAAAACAAACATTGATCTCTCACTAAATATTACTCCTCCTAATTCCATCTCTATAAATTCCGCGATAACCGATTCGGCTAGTAGTAGCGGAAGTGATATGGAATTTATCAGAGAGCCAACATTGAAGTTGGGGCTGGATTTTACACCAATAGACACACCACAAATACAACAACCAACATCTACAAATGCTCAAAAATTTCTAGATCATAATAACGATTATCTTCAGAAGCAGAAGGATCAACTTAATCATCCTCGGACTGATGGGTTATTCAAGAGTAATTCTAGATCGAATAATAAAGGTGGAAAAAGAAGTGTTAGAGCTCCAAGAATGAGGTGGACTACAGCACTTCATTCTCACTTTGTGCACGCAGTCGAACTCCTTGGTGGTCATGAAAGCAAGCATTTTAATCTCAGTCTTGATAATTTAGAATCAACTTCTTTTATTTTCTATGCAAACATGGTGTGTAACATTTTTTCTTATGTTTAGGAGCAACACCAAAATCAGTTTTGGAGCTGATGAATGTTAAAGACTTAACCCTGGCTCATGTGAAGAGTCATTTGCAGGTAAACAAAAAAATAAAAATAACTGCGTATTTACCTATCATTTTCTTTTGCTTGCTGCTTTTTTACAGTTAGAAAACTTGTCCTTTTTAGTAAATTTAGGGTTAGGGTTTTTGGGAAGAGAGTTTGGATACAAGTACTAAGGACAAAATGGCATCTAAAGTTAATGTTGGATCTTCAAAAACAATGAATTAAAAAAAAAAGTCACTGAACCTATTGTATTATTTCAGATCTTTTTTTTCTTCTTCTTTTATTGCAGATGTATAGAACGGTAAAGAGTGCTGATAGAGGAGCAGCAGGTGATTTTTTTTCTTTCCCCTTCCATGTGAATCAAATTTTCAACATTTTTAATCTCATTATCTTTTCATTTGTCGGATATAGTGCAAGGAAATTGTGATGTGAAAGTGAAAGATCAAGTGGCATGTACCGTGAACGATGAGGTGATGGCAGATAAAAATACTAAAATGGAACTTTCTAACACACTTAATGCATCATTTCTTCAGAAACTTCCTAGGTATGTGTTCTTATATAAGAACTTTTTCACCTAAATTCTAACATAGATGATACACATGATATTCACTTGATTAATAGTTTCATTATGGTATGTTATGAAACATATGTACCTAGTGCGCCACACTCATTAATTAATACATCCAATATCAAATTATTATTTTTACTAGAATTATTAATCCCAAAATTAGTGGCATTTAGTTTATGATCAAATATCCTAATGTAGCGTCTCGACCCCTAAAATCTATAGAAGAAAATCCAAAATATAATTATTAAAGTAAAGTTTCTTATCTTGAATCTTGATTGTGTAGTTTTAGAGAATCTCACATCACCATTAGTACTATACTTTGCTGACAATATGAGAACATCTTACATTTGGACAGAGAATAAATTGCAGTCTAGATATGTTCTCTTAACTGTATTGTTCTGTCCTCTTATTTTGTAAATTGTAATACTGCGTTGTTATATGCAAAGTTGTAACAGAGACTTAGAATAATAAAGACTGATTACATAAATTAATTGATCTTTTCAGAAAAGTTAAATGCTGTAGTCAATTCTATTTAGTTTGTAATCCAGCTGTTTTTATTGAGGTAGATTGATTTGAGCATTAATATGTAGTTAAATATGATCTATTTCATCATATTATAAGGCAATATGATAAAGTCATGCAATGATCAAGAAGCATTCTATTACACACATATGGAAAGCTTAGAGATCATTAATAATCATTTAATTTCGGCCACAATCACTGTTAGGATATTTGATAAATAGGTTATGTGTTTTTATTGATTGATGTAGTGAGGTGTATATTAATATGCACGTAGGCAGTTGATTAAGTAAAAGAAATTTCAAATACAAGCAAAAACACCAGTTTCAATAATCAGAAGTACCTGATTTTGATAAAATAGTGAATATGCTCTGATACCGGTTGTATACCTGAACAATATGCATGGGTTGAGCTAATATTTTTAGAGATCCTCGGACCTTGACAATTGTTGTTTTAAGCAATCAACCTGAAATAAATATCTATACTGTTAACTAGTTTGATTATGTGATGCCAATCTACCTGTATCTTGTAAGAATTCAATTTGATTACTTACTTAGGTCCATCGCTTCAACATTTTGAGTCTATAAAATTGAATTAGTTAATCTTGGAAGAAGAAAATAGGTTTTCATTCGATTTGATGAGATTATTGTTCTGAAAAGATTCTAACATATTATAGAAATAAATCTAGACACAGTGATTGGTTGCGTACTACAATCAGTTACACTTTGTAAACAATAAATTTGAGCGTTTCTAATGGTTCTCTAGCCTACACATCTTGCAACTATTTAAAGGATTACACTAACTAGTGCTTCTGCTCCACTTGAACTGCTATGCAACTAGTGCACTCAAAATACAGTCCAACTGATCAATAAGCAAATGGCCATATATGCCTGTCTTTATATGAAATTTGGAATAAACATGGCCATTTTTCTCATTATTCAACTCTTTCTTTCCTGTTAACCACTGGTTGAATTGTTGATTTTAAAAATTGATCCCCACAATTTTTTATTTATTTTTACTACAGCTTTCAAAGCTAGCATTTTACTAAATGGCAGTACAGACATTTAACATGAATTTACTCATTTATTAGTTAGGTCTATTATTCAGACACTGAGAATAAACCAAGAAATAGTTATTAAATTTTGGACAGTTTGTTTGTGGAGCCTTATACAGCACAATACTAGTAAATGTTTTGATGCCCACACAATTATCTGAACTATATTATAAGACTGGTGTTACATATTTTAATCTGAATGTTACCTACATTTATAATCGTTGTAGAATGTCTTTACTAATTTAATTTCAAACGTTATTGTTATTATTATTTTTATTATCATTTAAAAAATAGTAGGATACACCTATGATAATACTATAAGTCAACTCAAGTTCTACACTAGATAAGGGAAAAGTAAGATAATGTTGTTTTGTTAGTGAATTCAAAAGACTCAAAACATTGGAACTAAAAAACATCAGAATATGGTGACACAGTCAGTAATTAAAGAGCAAGGTTACACATCCTAATATTTTGTAACTATGTGGCAGCATTATCGAAAAGGTTTACTACTTACTTGAGATTTCATTTTATTGCAGTGAGTGCTTACAAATAGAAAAGCGTGACCAGAATAAATATCTGCAACAGAAGACACCAATTGAGATTAAGGTACTATACATACATTATGTAACCTAATAACATATATTGCATCATTCATATCATTTGGGTTCTAAGCAAAATGGAGAATCAATGTGAGGCTGTGCTACAGAAGAACAATGCTGTAAGCATATCATAGTCTAATACTATCATGAATGCTTCCATTGAATATTATTTTTTACTGTGAATAGGTGGCGATTGATATAGATAGAGAATACATCAATTCACCAATACGAGATCACAGAGAAGAAATAACAAGGCTTATGCTGTCTCCAGCTCGGCAAACTGAATTTAACTCTACTACTACCGATTTACTTAACTTAGAAATTTCACTAGGAAGACAAAGCTGGCAAATGGAAAGTGTGGAGTCTTCAAACGACTTAACTCTACTAAAATGTTTGTGAATTATAAACTAATGG

Functional annotation

Database	accession number	e-value	annotation
nr	TYI82311.1	1.6e-43	hypothetical protein E1A91_D05G213600v1
Swissprot	Q9FJV5.1	1.7e-34	Protein KANADI 4
trEMBL	A0A5D2L1M9	1.1e-43	Myb-like domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G42630.1	43.22	2e-41	166	ATS;KAN4	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04865	AT5G42630.1	236	105	5	74	309	70	276	43.22	2e-41	166
AfisC8G04865	AT5G42630.2	141	61	2	74	214	70	206	53.90	3e-35	145
AfisC8G04865	AT1G32240.1	112	35	1	103	210	207	318	65.18	2e-34	143

Ortholog group

Species	Genes
Allium cepa	g436398.t1
Allium fistulosum	AfisC8G04865
Allium sativum	Asa1G00901.1
Arabidopsis thaliana	AT5G42630.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	111	162	30.7	2.4e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000719	P	photoreactive repair
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003904	F	deoxyribodipyrimidine photo-lyase activity
GO:0005618	C	cell wall
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009536	C	plastid
GO:0009555	P	pollen development
GO:0009650	P	UV protection
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009956	P	radial pattern formation
GO:0010051	P	xylem and phloem pattern formation
GO:0010158	P	abaxial cell fate specification
GO:0010229	P	inflorescence development
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity
GO:0080060	P	integument development
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network