Gene information

Detail information of AfisC8G04897

Location

Gene	Chr	Start	End	Strand
AfisC8G04897	chr8	898456594	898457441	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	OMO70758.1	2.0e-33	hypothetical protein COLO4_28517
Swissprot	Q7XHI9.1	6.1e-35	bHLH transcription factor bHLH084
trEMBL	A0A1R3HKE3	1.4e-33	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G14760.1	78.00	3e-40	160		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04897	AT4G33880.1	101	25	0	37	137	248	348	75.25	2e-40	160
AfisC8G04897	AT2G14760.1	100	21	1	41	139	222	321	78.00	3e-40	160
AfisC8G04897	AT2G14760.3	113	21	2	41	139	222	334	69.03	2e-37	151

Ortholog group

Species	Genes
Allium cepa	g134668.t1; g242803.t1; g255117.t1; g408662.t1; g408664.t1
Allium fistulosum	AfisC8G04897
Allium sativum	Asa6G05078.1
Arabidopsis thaliana	AT1G27740.1; AT2G14760.1; AT2G14760.2; AT2G14760.3; AT4G33880.1; AT5G43175.1
Oryza sativa	LOC_Os03g10770.1; LOC_Os03g42100.1; LOC_Os07g39940.1; LOC_Os11g41640.1; LOC_Os12g39850.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	70	111	34.2	1.7e-08

Gene Ontology

Accession	Ontology	Name
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005739	C	mitochondrion
GO:0005634	C	nucleus
GO:0046983	F	protein dimerization activity
GO:0007623	P	circadian rhythm
GO:0042802	F	identical protein binding
GO:0009409	P	response to cold
GO:0009536	C	plastid
GO:0009555	P	pollen development
GO:0009704	P	de-etiolation
GO:0009733	P	response to auxin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0010017	P	red or far-red light signaling pathway
GO:0010114	P	response to red light
GO:0010187	P	negative regulation of seed germination
GO:0010500	P	transmitting tissue development
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0031539	P	positive regulation of anthocyanin metabolic process
GO:0048462	P	carpel formation
GO:0048766	P	root hair initiation
GO:0048767	P	root hair elongation
GO:0080113	P	regulation of seed growth
GO:0080126	P	ovary septum development
GO:2000012	P	regulation of auxin polar transport

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network