result

Gene information

Detail information of AfisC8G04987

Location

Gene	Chr	Start	End	Strand
AfisC8G04987	chr8	910833600	910834988	+

Sequences

CDS

>AfisC8G04987
ATGGCAAGAAAGAGAAAAAACACCACTGAACCAGAAAATTCAAACACACTCTCAACTTCACCAATAGGGGAAGATACATTACTGGGGATTCGACGTGCAAGAAAAAGATTTGTAGGAGTAAGGCAGAGGCCATCAGGGCGTTGGGTTGCAGAAATAAAAGACACAATTCAGAAAATTAGGGTTTGGTTAGGCACGTTCGACACGGCAGAAGAAGCTGCACGTGCATACGACGAGGCCGCATGTTTATTACGTGGTGCAAATACCCGAACTAACTTCTGGCCTTGTTCTCCTTCCCAGAACTCTGCGACTTCAGTCCTTCCTTCAAAAATAACCAACCTTCTTCTTCTGAGGCTCAAGGCTAGGAACAACACTATTGCCATGCAAGAAGCTAATGAAGAAAAACATCAGAAATATAAGCAGATTGAAGCTCCCCAAGATTTGTTATGTCAACAGCAGCAAATGATGCAGCAGGAGCAGGAGCAGGAGCAGATGTATGCGAATGAAGAGGTAGAAGAAGAAGAAGAAGATGTTCAGTTTACCGACTTCTTGAATGATTCAAGCATGTTAAATACTGAAATGTATGAGAACATACAGTCGGAGTACAGTGATCATATACCAAATACAGGTGAAATGGAGCTGAATTTAGAGTATGATCATATGCAAAGTATTACAGATGAAGGATGCATTGAGTCCATTGACTTGAGTGAGATGAACTTTCAGTTTGATGATCAGGATTCAGGTTCATGTTTCTATTCGCATTTTCAGATGGCTGGAGAAGTGGAAGAAGTGATGGAAAGAGAAGAAGACTGCATGGGAGATGAACCATCGATGATCATGAAAAGGATGAAGTATGAAAGGAAGATATCTGCTTCTTTGTATGCTTTGAATGGGATACCTGAATGTTTGAAGTTTAAGGTTCATCAGAGCAACATAGATGAGCATTTGAGTAGTTTAAGCAGTGCATGCAGGAATAAACAGGCTGAAGAAGTGGGTGATAAGAAAGAGGAGCAAAAAAACACACAAAATAATGATGAAACTTCATCTGATTGTGAACAGTCAATTTGGAACTCACTTGACCTTGCTCCTATTTGCTATGTTTCATAA

Protein

Gene

>AfisC8G04987
ACACTTCTCCAGCTACAGATTTCAAAACCACTGTCAAAAAAAGAAGACATGGCAAGAAAGAGAAAAAACACCACTGAACCAGAAAATTCAAACACACTCTCAACTTCACCAATAGGGGAAGATACATTACTGGGGATTCGACGTGCAAGAAAAAGATTTGTAGGAGTAAGGCAGAGGCCATCAGGGCGTTGGGTTGCAGAAATAAAAGACACAATTCAGAAAATTAGGGTTTGGTTAGGCACGTTCGACACGGCAGAAGAAGCTGCACGTGCATACGACGAGGCCGCATGTTTATTACGTGGTGCAAATACCCGAACTAACTTCTGGCCTTGTTCTCCTTCCCAGAACTCTGCGACTTCAGTCCTTCCTTCAAAAATAACCAACCTTCTTCTTCTGAGGCTCAAGGCTAGGAACAACACTATTGCCATGCAAGAAGCTAATGAAGAAAAACATCAGAAATATAAGCAGATTGAAGCTCCCCAAGATTTGTTATGTCAACAGCAGCAAATGATGCAGCAGGAGCAGGAGCAGGAGCAGATGTATGCGAATGAAGAGGTAGAAGAAGAAGAAGAAGATGTTCAGTTTACCGACTTCTTGAATGATTCAAGCATGTTAAATACTGAAATGTATGAGAACATACAGTCGGAGTACAGTGATCATATACCAAATACAGGTGAAATGGAGCTGAATTTAGAGTATGATCATATGCAAAGTATTACAGATGAAGGATGCATTGAGTCCATTGACTTGAGTGAGATGAACTTTCAGTTTGATGATCAGGATTCAGGTTCATGTTTCTATTCGCATTTTCAGATGGCTGGAGAAGTGGAAGAAGTGATGGAAAGAGAAGAAGACTGCATGGGAGATGAACCATCGATGATCATGAAAAGGATGAAGTATGAAAGGAAGATATCTGCTTCTTTGTATGCTTTGAATGGGATACCTGAATGTTTGAAGTTTAAGGTTCATCAGAGCAACATAGATGAGCATTTGAGTAGTTTAAGCAGTGCATGCAGGAATAAACAGGCTGAAGAAGTGGGTGATAAGAAAGAGGAGCAAAAAAACACACAAAATAATGATGAAACTTCATCTGATTGTGAACAGTCAATTTGGAACTCACTTGACCTTGCTCCTATTTGCTATGTTTCATAAGTTCTATAAATAAGCTTGTGTTTAATTTATATGCTGTAAAATGCATGGGCTTCCATAGCTCGATTAAGAGTCTCGGCTTGCTTCTACTTTTGAGGATCAAGATTTAGCAGTTGCGATCTTAATGAGTTCTATGTGGAGATTACAATAAAGTTAAAAGTTATTTGTGTTCTTCAAACGTAAGGTTTACTAAGCAAAATGCTTCTGATGTATTAGTTGTATTATTCAGTTTAATGATAT

Functional annotation

Database	accession number	e-value	annotation
nr	ONK75862.1	5.1e-86	uncharacterized protein A4U43_C03F21330
Swissprot	A2Q5W1.1	9.8e-26	Protein ERF REQUIRED FOR NODULATION 1
trEMBL	A0A5P1FCP1	3.7e-86	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G19790.1	74.07	1e-27	120	RAP2.11	related to AP2 11

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04987	AT5G19790.1	81	17	2	34	114	19	95	74.07	1e-27	120
AfisC8G04987	AT4G11140.1	66	27	0	35	100	85	150	59.09	5e-18	89.0
AfisC8G04987	AT1G72360.1	64	27	0	29	92	17	80	57.81	1e-17	87.8

Ortholog group

Species	Genes
Allium cepa	g52860.t1
Allium fistulosum	AfisC8G04987
Allium sativum	Asa1G00828.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	36	85	51.4	8.7e-14

Gene Ontology

Accession	Ontology	Name
GO:0000302	P	response to reactive oxygen species
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0042802	F	identical protein binding
GO:0009414	P	response to water deprivation
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010030	P	positive regulation of seed germination
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010143	P	cutin biosynthetic process
GO:0010166	P	wax metabolic process
GO:0010200	P	response to chitin
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016604	C	nuclear body
GO:0019760	P	glucosinolate metabolic process
GO:0034059	P	response to anoxia
GO:0035865	P	cellular response to potassium ion
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048528	P	post-embryonic root development
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0071456	P	cellular response to hypoxia

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network