result

Gene information

Detail information of AfisC8G05106

Location

Gene	Chr	Start	End	Strand
AfisC8G05106	chr8	932754602	932755921	+

Sequences

CDS

Protein

Gene

>AfisC8G05106
ATGCTTCCATCCAGCAAATTAATAAATCAATAAATAATGCTTTGATCAGATCAGATATATCATTTCGAACCCTAAAACCCTTTCACTCATTTCTTCTTTAAAAAGCTACATCAAGAGCTTAAAAGCAAACCCATTCACTACATATCATATTGTCAATCATATATACGTTAATGCTACGATCATGGAGGAATTGATTAGCGTATCCACAGGCATTGGTTCTAATTTGCGTAGCTGCAATAATGTTCTTCATGTCCCTTCATATTCAAATATTGATCATGTTCTTCTTCAGACTTCTCATCAAATTGGTCAGCATGGTTCTGAAAATAGCTTAGATCATCATCATGGGTTAGCCGGTTTCATGTTCGGGAGCTTTAGTTCTGGTGATTGTTCCTTAAGTGTTAAAGATCAGGTCTGTAAATTGTTGTTTATGATGTTTATATTTATAGTTTAGTATGAACTTTCTACTTATACAAATCTTGCCTGTTACAGGTAGTGTTGAGGACTCCAGATCCGAAAGCTGCAAGTATTAATCAAAACATTGCTGAAACTACTACAGATAGTGCAGATAATCCCTCATGGTATTAATCTTCAACATATGCACACATACATACATGTACAAGTGTATATATATGCATGTATACGTTATTACATATACATCCGTACATTTAGATATGCACATATGAATATAGGTTGAAGAGTAGAGGATCGGATAAGGGAAAGAAGAAAATGAGGAGGAGGTTGATGAGAGAACCAAGATTTAGCTTCCAAACAAGGAGTGATGTAGATGTGCTTGATGATGGCTACAAATGGAGAAAATATGGACAAAAAATTGTCAAAAATAGCCTTCATCCAAGGTATATTTACCATTTTTACCGTTTACTGAATTAGACAAAATATTAACTAAGTTAATACAAAAGGCATAAAGGGTATCAGAACTTTGTAAGATGGTAATGTTTAGGGTGAGTAATGATGAGAATAAATGAAACAGGAGTTATTTCAGATGCAGCCATGAGAAGTGCAGAGTGAAGAAGAGGGTGGAAAGAGTATCGGAGGATTGTAGAATGGTCATCACTACGTATGAGGGTAGACATACTCATTTCCCTTCCGATGATGGGACGACCTCATCTCATGAAGAACTCGATTGCTTCCCTTCGTTTTAGCAAACTATGTCTACCATGTTCATTTCATAAGTTAACCTTTTTCTTTTTTGCCCGGATGAGTATGTATTATTGAACTTTAAACTAGATTGTTTCGTGCTATAATGTACATAAGATGATGTTTCCTTTGCTTTATTATTTAATTTATTATTATTGTTTTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_003521060.1	2.2e-44	probable WRKY transcription factor 12
Swissprot	Q93WY4.1	8.4e-41	WRKY DNA-binding protein 12
trEMBL	I1JMP1	1.6e-44	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G44745.1	66.92	4e-45	177	AtWRKY12;WRKY12	WRKY family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G05106	AT2G44745.1	130	36	3	91	217	93	218	66.92	4e-45	177
AfisC8G05106	AT4G39410.1	99	28	1	114	208	196	294	67.68	1e-34	142
AfisC8G05106	AT1G69310.2	84	28	1	114	197	121	203	65.48	2e-28	122

Ortholog group

Species	Genes
Allium cepa	g130999.t1; g131000.t1; g355982.t1
Allium fistulosum	AfisC8G05106
Allium sativum	Asa1G00683.1
Arabidopsis thaliana	AT2G44745.1
Oryza sativa	LOC_Os04g46060.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	141	197	85.7	1.8e-24

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006817	P	phosphate ion transport
GO:0030010	P	establishment of cell polarity
GO:0008134	F	transcription factor binding
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009624	P	response to nematode
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009942	P	longitudinal axis specification
GO:0009961	P	response to 1-aminocyclopropane-1-carboxylic acid
GO:0010055	P	atrichoblast differentiation
GO:0010200	P	response to chitin
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032107	P	regulation of response to nutrient levels
GO:0043620	P	regulation of DNA-templated transcription in response to stress
GO:0048527	P	lateral root development
GO:0051607	P	defense response to virus
GO:0070301	P	cellular response to hydrogen peroxide
GO:1901002	P	positive regulation of response to salt stress
GO:1901141	P	regulation of lignin biosynthetic process
GO:1904369	P	positive regulation of sclerenchyma cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network