result

Gene information

Detail information of AfisC8G05121

Location

Gene	Chr	Start	End	Strand
AfisC8G05121	chr8	936325685	936327279	-

Sequences

CDS

Protein

Gene

>AfisC8G05121
CATTGTAAAGCAACACCCTTCCCTCCCTCACCCACTTAGCTCACTATTTATACCCACTTTCTCTTCCTTTCCTCCTCATAACTTCCTTTAATTCATTCATCCCTTTTTGCATTTAACCACCTCCTTTTCCCATTAATCACTGTTTCAAAAGAAAAAAGAAAAAAAGCTTCAAAAGAAAAGATGATGGTTGATAGAGATGAAGATCTAGGCCTAAGCCTTAGCCTCAAGCCGGCCACCTCTTCTCATCATCTTCCTCTCAAACTCAATTTCATGCCTTCTTCCACTTCTCAATGGGTTCATCTTCTTGCTCCTCCCTCAGGTATTTTCACTTTCTTAAAAATCACTTAAGAAAAAGCTTAAGAACTAGTTACAAAGTGAACATATGATTAGCAGGAGAAAGAGGGCTAAAAGGAATAGATGTGAACCGAGCTCCAGAAAACGAAAGGGAGAGCGAAGAAGAAGCAGGAGTGTCTTCTCCAAACAGCACTGTTTCCAGTACTTTGAGTGGCAAAAGAGGAAGTGAAGGCTTGATGAACGGTAATGGCGATGTCAATTATCATAACGACACTACCGATTCACGAGGAATCGCGAACAGCGACGAAGAAGACGGCGAAGGATCCAGGAAAAAACTCAGGCTTTCTAAGGACCAGTCTGCTATTTTGGAGGAGAGCTTTAAAGGCCATAACACCCTCAATCCCGTAAGTTTCTTCTAGATCTAAAACTAAGAAGAAGAATAAGTTAAGAGGGCTTATAAGTAGAGGAACCAAATCGATCTTTTGATTTTGTTACTGTAAACAGAAACAGAAGCAAGCGTTGGCGAAGCAGTTGAACTTACGGCCAAGGCAAGTGGAGGTCTGGTTCCAAAACAGAAGAGCAAGGTAAATTAACCACACAGCTTTAAATTTACCTTGGGTTAAAAGTAAGCTAATTACCGTTTACTGAACCGGTTAATTACAGAACAAAGTTGAAACAGACGGAGGTGGACTGTGAGTTTTTGAAAAGGTGCTGCGATAACTTAACAGAAGAGAACAGGAGGCTTCAGAAGGAAGTGCAAGAGCTCAGAGCGTTAAAGCTTTCGCCGCAGTTTTACATGCACATGACGCCTCCTACTACGCTGACTATGTGTCCTTCGTGCGAACGCGTGTCATCGTCTCCTGCTGCCACGTCAGCGCAGACGGCTTCTTTGGCGGCTCATCAGAACCGTCCGATCGTGCCCTGGGCTCCTGTTCCTATTCGTGCTCAGAGATGAAGTTGTTCTTTTTTCGTTTTTTTTTTATTTGTATGATAAGGTTTTAGATGGAATCCCTCGAGTTTTTTTGGTTTTGAATGGGTTTCTTTGTTTACTTTTTAGTTGCCTGAAAAAGGGAAAAATATATAAATTTGTTGGTAGTTGTTAGTTTGGGGAGTGTTGTAGCGTTTTTTGGGATGGAAATTACATTGTATGAAGACGGTGAATGCTTCGTTTATTGTCGTAGAATGTGCGTCCAAGAATTCAGAAAAAAAAAAAAAGTAATTATGGAAAATGACTGTATGATTTTGGTTGCTTTTGGAAAATGGTTTGATGAATTTGAAAATGATTAACTAACATTGTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010933626.2	2.2e-78	LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT4
Swissprot	Q05466.1	2.8e-70	Homeodomain-leucine zipper protein HAT4
trEMBL	A0A6I9RWL7	1.6e-78	LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47370.1	58.21	6e-74	274	HAT2	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G05121	AT5G47370.1	280	84	11	1	263	1	264	58.21	6e-74	274
AfisC8G05121	AT4G16780.1	215	58	4	51	265	68	268	66.51	8e-71	263
AfisC8G05121	AT3G60390.1	252	80	7	38	268	59	307	58.73	8e-70	260

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04618.9	HD-ZIP_N	Domain	2	89	66.0	3.6e-18
PF00046.26	Homeobox	Domain	123	177	61.0	6.2e-17
PF02183.15	HALZ	Family	179	213	45.5	5.6e-12

Gene Ontology

Accession	Ontology	Name
GO:0000123	C	histone acetyltransferase complex
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0008283	P	cell proliferation
GO:0009506	C	plasmodesma
GO:0009641	P	shade avoidance
GO:0009733	P	response to auxin
GO:0009735	P	response to cytokinin
GO:0009826	P	unidimensional cell growth
GO:0010015	P	root morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010017	P	red or far-red light signaling pathway
GO:0010218	P	response to far red light
GO:0010321	P	regulation of vegetative phase change
GO:0010484	F	H3 histone acetyltransferase activity
GO:0010582	P	floral meristem determinacy
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016573	P	histone acetylation
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0043621	F	protein self-association
GO:0048467	P	gynoecium development
GO:0080127	P	fruit septum development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network