result

Gene information

Detail information of AfisC8G05229


Location
GeneChrStartEndStrand
AfisC8G05229chr8963003551963004102-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020272201.11.8e-40nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG7.26.6e-24Transcriptional activator HAP5B
trEMBLA0A5P1EDV61.3e-40CBFD_NFYB_HMF domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G54830.161.362e-27 117NF-YC3nuclear factor Y, subunit C3

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Ortholog group
SpeciesGenes
Allium cepag385939.t1
Allium fistulosumAfisC8G05229
Allium sativumAsa1G00568.1
Arabidopsis thaliana
Oryza sativaLOC_Os04g58680.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00808.20CBFD_NFYB_HMFDomain238775.13.5e-21

Gene Ontology
AccessionOntologyName
GO:0000436Pcarbon catabolite activation of transcription from RNA polymerase II promoter
GO:0000978FRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077Ftranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003713Ftranscription coactivator activity
GO:0006457Pprotein folding
GO:0005829Ccytosol
GO:0005654Cnucleoplasm
GO:0008134Ftranscription factor binding
GO:0009738Pabscisic acid-activated signaling pathway
GO:0009740Pgibberellic acid mediated signaling pathway
GO:0010029Pregulation of seed germination
GO:0016602CCCAAT-binding factor complex
GO:0032993Cprotein-DNA complex
GO:0043457Pregulation of cellular respiration
GO:0046982Fprotein heterodimerization activity
GO:0048586Pregulation of long-day photoperiodism, flowering
GO:0051247Ppositive regulation of protein metabolic process
GO:2000905Pnegative regulation of starch metabolic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K08066NFYC, HAP5; nuclear transcription factor Y, gammaEC:- Antigen processing and presentationko04612

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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