result

Gene information

Detail information of AfisC8G05266

Location

Gene	Chr	Start	End	Strand
AfisC8G05266	chr8	971079151	971080420	+

Sequences

CDS

Protein

Gene

>AfisC8G05266
ATGGAGTTGGATGGAGTCCTATTATATCATACACTTTTAGGGTACCAGAAGGCTGGGAAGAGGTATTCCTTTTAATGCCTCTAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAACCTAACATTGTCCTTAAACTCACACACACACTCTTCTACTCAACTCAACAACATCTTCATTGATATCTGTGCTCAATTTGGCCAAATAAGTTACCCAATAATATATACAAACTTTATTTTTCTTTTTATGTTTTCTCTTCTTCTTTCTTCGAAGGTATAATTCATCAAAAATTGATCACCTTAAAAGAAAAGGTAACTTCTTTTGTACACCTTAGGTTCCAGTGTCAATAGCAGACCTTGGTGGCACTGAGATCGATCTAAGATTTGCAAACGCAAAAGGAGGACGCTTGTTTGTAATCGTCGCTCCGGTTCTTAGATTTGCAGGTATGTTTCGGGATTTTGAAATGCTAGAAAGCATACTAATTGACTTATATATATCATTCTTTTTAATTTAATTTTATTCCCTTTAGATAACCTGGGAGATAATGCAAAAATAGAAGAGATTGGGACACCGGAAAAGGTGATAAATGCATTCGGACCAGAAGTTATAGGAGAAAATGTGGAAGGCAAAGTGTTAAGCATGAAAGAAGCAGAATATGATGGTAGGAAATATTACCAATTTGAGTTAGAACCTCCTCACATATTCATTTCTGCTATTGCTGCTGGAAACCGATTTTACTTGTTCGGCATCGCTGCAAATGGTACAAAATTTTATGTTCTGTGGGTCTTTTTTCTTGATGTTGCTGTTATGTTTTGGTCAAGTATTCTGAACTTGAGGATTTACTTTGTACGTAGGTCTTCAGTGGAAGAGGCATAATAAGGATTTGAAGCAGATTGATGTTGCATTATGTTGCAAAAACCAAAGTCAAGAGAGCTCTATTGACTCAGGAATTAGTATAAAGTCAAGAAGAAGATGATGAAGCCATCGACGAAGTCGAGAACGAGGATGCAGACAACGGAGAAGAAGAAGAGAACGGAGACACCTTATGCGACGTGTGCGGGGACAACTACGCGTCGGACGAGTTCTGGATCTGCTGCGACATCTGCGAGAAGTGGTTCCACGGCAAGTGCGTTAAGATAACCCCAGCCCGTGCAGAGCACATCAAGCAGTACAAATGTCCTTCCTGCAGCACCAGCAACAAGCGCGCTCGCCCTACTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020253080.1	4.3e-43	psbP domain-containing protein 4, chloroplastic
Swissprot	O49292.2	2.7e-42	OEC23-like protein 5
trEMBL	A0A0F7GZ47	3.1e-43	Photosystem II reaction center PsbP family protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G77090.1	78.50	4e-44	174		Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G05266	AT1G77090.1	107	23	0	34	140	133	239	78.50	4e-44	174
AfisC8G05266	AT5G20510.1	61	8	1	163	223	202	260	83.61	1e-27	120
AfisC8G05266	AT3G42790.1	60	9	1	163	222	192	249	81.67	1e-25	113

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01789.13	PsbP	Family	66	143	25.7	7.6e-06
PF00628.26	PHD	Domain	168	216	41.8	6.7e-11

Gene Ontology

Accession	Ontology	Name
GO:0003714	F	transcription corepressor activity
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008270	F	zinc ion binding
GO:0009414	P	response to water deprivation
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045727	P	positive regulation of translation
GO:0016569	P	covalent chromatin modification
GO:0035064	F	methylated histone binding
GO:0043565	F	sequence-specific DNA binding
GO:0048767	P	root hair elongation
GO:0055065	P	metal ion homeostasis
GO:0071472	P	cellular response to salt stress

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network