Detail information of AfisC8G05337


Location
GeneChrStartEndStrand
AfisC8G05337chr8984680027984698989-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020261080.15.5e-73agamous-like MADS-box protein AGL9 homolog
SwissprotQ38694.16.4e-66OM1
trEMBLQ6TYI72.1e-66MADS box protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G24260.153.475e-63 237AGL9;SEP3K-box region and MADS-box transcription factor family protein

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Ortholog group
SpeciesGenes
Allium cepag434609.t1
Allium fistulosumAfisC8G05337
Allium sativumAsa1G00483.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain105788.41.4e-25
PF01486.14K-boxFamily9217476.61.2e-21

Gene Ontology
AccessionOntologyName
GO:0001708Pcell fate specification
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0046983Fprotein dimerization activity
GO:0009888Ptissue development
GO:0009535Cchloroplast thylakoid membrane
GO:0009611Presponse to wounding
GO:0010093Pspecification of floral organ identity
GO:0048481Pplant ovule development
GO:0048833Pspecification of floral organ number
GO:0071486Pcellular response to high light intensity
GO:0071492Pcellular response to UV-A

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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