Detail information of AfisC8G05475


Location
GeneChrStartEndStrand
AfisC8G05475chr810070167571007032925-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAGV31154.12.0e-121AGL6-like MADS-box protein
SwissprotQ8LLR1.11.9e-84MADS-box protein 3
trEMBLT2CCV21.5e-121AGL6-like MADS-box protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G45650.157.723e-76 281AGL6;RSB1AGAMOUS-like 6

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag69743.t1
Allium fistulosumAfisC8G05475
Allium sativumAsa1G00367.1
Arabidopsis thalianaAT2G45650.1
Oryza sativaLOC_Os02g45770.1; LOC_Os04g49150.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain105792.57e-27
PF01486.14K-boxFamily103190109.56.4e-32

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0001708Pcell fate specification
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0009535Cchloroplast thylakoid membrane
GO:0009611Presponse to wounding
GO:0010022Pmeristem determinacy
GO:0010093Pspecification of floral organ identity
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0048481Pplant ovule development
GO:0048833Pspecification of floral organ number
GO:0071486Pcellular response to high light intensity
GO:0071492Pcellular response to UV-A

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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