result

Gene information

Detail information of AfisC8G05613

Location

Gene	Chr	Start	End	Strand
AfisC8G05613	chr8	1034451858	1034453292	+

Sequences

CDS

Protein

Gene

>AfisC8G05613
TAACCCTCTATTTATAAACAAAAACCATTGTTTAATCACTTCTCCTTCCACATCTATATAACAACTAGAACCCCAACCTTTGTTTCACTTCACAGAACACCTCTACTTCATTTTATTTTTTCAAACATGATGAATAATGGAAGAAGCAACAGCTACAACAGCACATACCCATTCACTCAAACTCAATGGCAAGAGTTAGAAAACCAAGCATTGATATACAAATACATGGCTTCAGGCATTCCAATACCTTCTGATCTTCTCCTCCCCATAAAAAGAAGCTTCTACCAAAACCCATCCTCTCCATTCATCCAACCAACAAGTAATTTATTTTATTTTATGTTTCCTTCATTTTTTCCACGTTCTACTCATTTGGATATGTTTTACTTATACTTATTAGTCATACTAAGCAAAAAAGATTGAATCTTGACATGTAAAAACATGAACTTACAGTGGGATGGAACTGCTACCAAATAGGTTATGGAAGAAAAGCAGAAGATCCTGAGCCAGGCAGGTGCAGAAGAACAGATGGCAAGAAATGGCGGTGCTCGAAAGAAGCGTACCCTGACTCCAAATACTGTGAGAGACACATGCATAGAGGAAAGAATCGTTCAAGAAAGCCTGTGGAAATTTCTCTTGCAAGCAGTACCAGTGTTGCCAACAGTAGTGTTGCTGATTGCCATGTTGTTAATGACTCTTCTTCATCTTCTTCATCGTTTTGTAACAATATCGATCAGTTTCGGTACCCGAACCCTCTTCTGTATTCTCATCCTTATCAGTCTCAGAATAATACTGCTTCCAACTTTGGTCTTGATTCTGGCTCTTTCTCTTCTTCCACTGAAAGAGATTACAGGTACAAACACAAGACATAACTAATCTATATTAATAAAAAGAATATTGTATAAAAATATGTGTGCATTTGAATAGGTATTACCAAGGGATGAAGGATGAATATGGGTACATGGCAGACACAAATGGAGGAGATAGAGGGAGTTCATGGGAGCTAAGGCCATTAGGGCTAGGAGAGCCAAGACTTGATGTAGATGACAATAAGAACAAGCATTGCTTTGTATTAGGAGCAGATTTCAAGCAAGAAAAACCTGTGAAAGAAAGAGATTTCTTTGACCTTGATTGGCCACAAAAGAGCAATAAAGGTACATGGATGGGGTTAGAAGAAGATAACAATAACTCAAACCAAGCACCTAATTCTATTTACTCCAAGACTAATCTTTCCATTTCTATCCCAATGGGTTTGCATGATTTTCCTCAATGGTTTGTTTCTTTGTGTTCTTTTATGCTAAATTTTATGTGTGTAAAGTTGAATACATGTTCATCAAACTGAAAGAAAAGGTTTTGATTTCATTGATGTAGATGATTCAAGATGGGACTAAAAGAACTGTTCAGACTTACTTCAGTGCGTCCATGGTCTCTGCTTGCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008786731.2	3.3e-70	growth-regulating factor 1-like
Swissprot	Q6AWY8.1	1.8e-49	Transcription activator GRF1
trEMBL	A0A6I9S2U5	3.5e-69	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13960.1	65.45	2e-41	166	AtGRF5;GRF5	growth-regulating factor 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G05613	AT3G13960.1	110	36	2	15	123	16	124	65.45	2e-41	166
AfisC8G05613	AT4G37740.1	124	53	1	15	138	164	285	55.65	9e-39	157
AfisC8G05613	AT2G06200.1	122	33	3	12	121	3	123	62.30	1e-37	153

Ortholog group

Species	Genes
Allium cepa	g526579.t1
Allium fistulosum	AfisC8G05613
Allium sativum	Asa1G00241.1
Arabidopsis thaliana	AT2G06200.1
Oryza sativa	LOC_Os02g53690.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	15	48	54.4	6.8e-15
PF08879.7	WRC	Domain	81	123	73.1	1e-20

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005618	C	cell wall
GO:0005635	C	nuclear envelope
GO:0005774	C	vacuolar membrane
GO:0005794	C	Golgi apparatus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006995	P	cellular response to nitrogen starvation
GO:0008285	P	negative regulation of cell proliferation
GO:0009506	C	plasmodesma
GO:0009570	C	chloroplast stroma
GO:0009624	P	response to nematode
GO:0009631	P	cold acclimation
GO:0009739	P	response to gibberellin
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0010114	P	response to red light
GO:0010218	P	response to far red light
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0050826	P	response to freezing
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0019904	F	protein domain specific binding
GO:0030912	P	response to deep water
GO:0043565	F	sequence-specific DNA binding
GO:0045309	F	protein phosphorylated amino acid binding
GO:0048046	C	apoplast
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0051365	P	cellular response to potassium ion starvation
GO:0061062	P	regulation of nematode larval development
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network