result

Gene information

Detail information of AfisC8G05668

Location

Gene	Chr	Start	End	Strand
AfisC8G05668	chr8	1045363631	1045365042	+

Sequences

CDS

Protein

Gene

>AfisC8G05668
GGAAAATGGTTAAAACTTGTATGTAACTAGAGTTTTATACTTCTTAAAAAATAACAAGAAATAAACAATAACATATGAACACCTCACTTGATTGTGACATTCCCTATATATATCTTTCTTTTGAGGTCCTCTCTTATCAATTCCACTCTTCTTTCCTCAATACCTTTTCCTCTCAATATCATTTCAATTATTCAATATAATAATATGGGCAGGCATTCTTGTTGCTATAAACAAAAACTTAGAAAAGGGTTATGGTCACCTGAAGAAGATGAAAAGCTTTATAATCACATTACAAAGTATGGCCATGGTTGCTGGAGCTCTGTCCCTAAACAAGCAGGTAATGTACATTAATTCAACTCTACAACAATTATATATGGTATTGAATTAAAAAAATAAAATAATAGTTGTGTTAATGTTTGTTCAATATCAGGTCTTCAGAGGTGTGGAAAGAGTTGCAGGCTGCGATGGATAAACTACTTAAGACCTGACCTGAAACGAGGAGCGTTTTCAGAACAAGAAGAAAATCATATAATTGAACTGCATGCAATTTTAGGAAACAGGTAAGTATATATATGCATATACATATTTGTATTTATTTTTCCAAGTAAATTATTTTACCTTATATATGAATAGGTGGTCACAAATAGCAGCACAGCTGCCAGGCAGAACAGATAATGAGATAAAGAATCTATGGAACTCAAGCATTAAGAAAAAGTTAAGACTTAAGGGCATTGATCCTAATACACATAAGTCTCTTTCTGAAGTTGATTCCAATACAAAAGACTTCAATAAACAAGTCTCTGAAGCAACAAAAGAAATTTTGCTTGATAATAGTTATAGCCCTGAATGCAGTGCTGGTTTATCAATGAATCAAAACTCATCTATATGGTTTAACCCGAACCCATTATCGAACTCTTTGGAAAATACAGGCTTTCAGTACTGGGAAACTGGTAGTTACTATAACAATAGTAATAATGGTAATATTAACAGTGGTAGCAATATGAATGATATTTCTCAGTTTGATGGAAGCATACTTCAGTGGCTTGATTTGACTTCAGATAAAGAATCTGGTAATCAATTTCAGGTCAATGAAGAGCTGAAGTGGCCTGAGTACCTTAATGGCTCGATTACGAATACTGCATTGATTCAAAATCAAGGTTTAATGTATGGTGATCTTGTTAAAGAAGAAAGCCAGTTTAATATCAATGGATTGAATTGTAAGGATGTAAGCAGAAATTATTATGGCATTTGATGGTGGATGTGTGCTTATGAAGAAGAAGAAAGTGTCATTTTTGGAATTTTAATATAAAAAAGGGTTCGTTTTCTTTTACTTGAATTTATGTTGAGGAGCATTGTGGTATGGATTGTTGATGTTCATCTGTAAATAGGCTTCATGATACAGAAGGTTCTTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020673850.1	2.0e-80	transcription factor MYB61
Swissprot	Q8VZQ2.1	1.7e-68	Myb-related protein 61
trEMBL	A0A2I0WQV6	1.4e-80	Transcription factor MYB86

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G01680.1	80.39	4e-72	268	AtMYB55;MYB55	myb domain protein 55

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G05668	AT4G01680.1	153	30	0	1	153	1	153	80.39	4e-72	268
AfisC8G05668	AT4G01680.3	154	31	0	1	154	1	154	79.87	8e-72	267
AfisC8G05668	AT4G01680.2	165	30	1	1	153	1	165	74.55	1e-69	259

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	55.9	3.1e-15
PF00249.28	Myb_DNA-binding	Domain	67	109	48.6	6.2e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001944	P	vasculature development
GO:0016020	C	membrane
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009901	P	anther dehiscence
GO:0009909	P	regulation of flower development
GO:0010089	P	xylem development
GO:0010091	P	trichome branching
GO:0010119	P	regulation of stomatal movement
GO:0010214	P	seed coat development
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network