result

Gene information

Detail information of AfisC8G05685

Location

Gene	Chr	Start	End	Strand
AfisC8G05685	chr8	1048517531	1048518608	-

Sequences

CDS

Protein

Gene

>AfisC8G05685
CAGTCGTCAGTTGCTTCCCTGTTATTTTATAAAACCCTAGCCCTAATTGCAAAAGTTCATGGCGTCTCCTTCGGAGTTCGATGACGAAGATTTCAACGATTTCGAAATAGATGAGCATAATTCCTACTTCGAGATTGAAGAAACACAGCAAGACCCATTAATTCCAAACCCTAACATCAACAATCTCGACTCAATTCTCCTCGAAACCAACAACAATAACACCATCCAAACCCCTCAAAATAACAGCCCTCCTGATGAACCCCGCCCTCTGTTCCAGCGTCTGTGGACGGAGGACGATGAAATCGTTATCCTTGAAGGATTCCTCGATTTCGTGACTAAACGTGGCACTTCCCACCACAGCTACCAGCACGACACTGGACCGTTCTACGATATAATCAAGGACAAAATTTCGCTTGAGTTTAGTAAAAATCAGCTGATCGAGAAAATTCGGAGGCTGAAACGAACGTTTCGCTCTGTGGATGGAAGGATTAGTGCAATGGGTGATCGTTTTCGGTTTAAAAGTGATCATGAGAGAAGACGATACGAAATTTCAAAGATGATTTGGGGCTCTACAGTTAAAAAGACGAGGAATGGAAGGAAGATTGAGGAAAGATCGGATTTTAATGGCAAAGATGAGGGTTCGAATGTTGTGGAGGAGACAGTGAAAAGTTGTTTAAAGCCAATGTTTACGGAGTTGATTAAGGCTGGTTTTGGAAATGGTGGATCACTTTTGAATTCGTTGAGTCTGGGTTTAGGACCGGGGTCAGGGTTGGACAATTGGCCAAATGGACAGAAGTGGAAAGAGCAGCAAATTTTGGAGCTTGAAGTTTATTTGAAGAGAGTTGAGTTGCTAGAAGAGCATATTAGGTCTAGTTTGGAAGAGCTTAAAGCAAAGTTGGCAGTTGAAGGTATGCAAACTGATGAATGACGTGAGACATTGTCATCTTTTTTCAACTATTTCTTTTTTAAATTACAACTGTTGTTTCAAAAGGCAATAGACTTTGGTAGTCAGTTCAGTTTAGTAACGTAATGTTGAATTTCTTTTTATTTAATTGACAAAATTGTCTTAGAATCGTTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_017696070.1	1.3e-44	probable transcription factor At3g04930
Swissprot	F4K5T4.1	5.5e-32	Storekeeper-like protein At5g28040
trEMBL	A0A8K0HTU9	2.7e-44	Mediator-associated protein 1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G04930.1	52.68	6e-26	114		DNA-binding storekeeper protein-related transcriptional regulator

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G05685	AT3G04930.2	112	49	3	64	174	130	238	52.68	5e-26	114
AfisC8G05685	AT3G04930.1	112	49	3	64	174	130	238	52.68	6e-26	114
AfisC8G05685	AT3G04930.1	74	30	1	205	278	392	451	40.54	7e-08	54.7

Ortholog group

Species	Genes
Allium cepa	g507434.t1
Allium fistulosum	AfisC8G05685
Allium sativum	Asa1G00229.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04504.11	DUF573	Family	72	170	99.6	1.1e-28

Gene Ontology

Accession	Ontology	Name
GO:0005829	C	cytosol
GO:0005730	C	nucleolus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009507	C	chloroplast
GO:0010629	P	negative regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0016592	C	mediator complex
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0071333	P	cellular response to glucose stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network