Detail information of AfisC8G05733


Location
GeneChrStartEndStrand
AfisC8G05733chr810558365541055845959-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrONK78756.16.0e-139uncharacterized protein A4U43_C02F22090
SwissprotQ949N0.12.3e-47Protein NTM1-like 4
trEMBLA0A5P1FKB04.3e-139NAC domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G04410.150.842e-49 194anac078;NAC2NAC domain containing protein 2

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag130589.t1
Allium fistulosumAfisC8G05733
Allium sativumAsa6G00222.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02365.12NAMFamily1214082.23.4e-23
PF02365.12NAMFamily21334483.71.1e-23
PF05641.9AgenetDomain47953831.02.4e-07
PF05266.11DUF724Family799926138.71.7e-40

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0000398PmRNA splicing, via spliceosome
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0003002Pregionalization
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0050832Pdefense response to fungus
GO:0005829Ccytosol
GO:0005682CU5 snRNP
GO:0005685CU1 snRNP
GO:0005686CU2 snRNP
GO:0005687CU4 snRNP
GO:0005730Cnucleolus
GO:0005732Csmall nucleolar ribonucleoprotein complex
GO:0005789Cendoplasmic reticulum membrane
GO:0008283Pcell proliferation
GO:0009531Csecondary cell wall
GO:0009555Ppollen development
GO:0009819Pdrought recovery
GO:0009735Presponse to cytokinin
GO:0009737Presponse to abscisic acid
GO:0009741Presponse to brassinosteroid
GO:0009901Panther dehiscence
GO:0010114Presponse to red light
GO:0010150Pleaf senescence
GO:0010200Presponse to chitin
GO:0010224Presponse to UV-B
GO:0010228Pvegetative to reproductive phase transition of meristem
GO:0010455Ppositive regulation of cell fate commitment
GO:0010981Pregulation of cell wall macromolecule metabolic process
GO:0015030CCajal body
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0031930Pmitochondria-nucleus signaling pathway
GO:0042803Fprotein homodimerization activity
GO:0043068Ppositive regulation of programmed cell death
GO:0045491Pxylan metabolic process
GO:0045770Ppositive regulation of asymmetric cell division
GO:0046540CU4/U6 x U5 tri-snRNP complex
GO:0046982Fprotein heterodimerization activity
GO:0048103Psomatic stem cell division
GO:0048759Pxylem vessel member cell differentiation
GO:0048829Proot cap development
GO:0071004CU2-type prespliceosome
GO:0071013Ccatalytic step 2 spliceosome
GO:0071365Pcellular response to auxin stimulus
GO:2000377Pregulation of reactive oxygen species metabolic process
GO:0090058Pmetaxylem development
GO:0090059Pprotoxylem development
GO:0090602Psieve element enucleation
GO:1900409Ppositive regulation of cellular response to oxidative stress
GO:1901348Ppositive regulation of secondary cell wall biogenesis
GO:1990110Pcallus formation

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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