result

Gene information

Detail information of AfisC8G05805

Location

Gene	Chr	Start	End	Strand
AfisC8G05805	chr8	1070631686	1070634290	+

Sequences

CDS

Protein

Gene

>AfisC8G05805
TTCATTTTTCCCTCCACTCATTTTTCCTCTCTTACCCTTATTATATATAATCTTTTTCTTTAACTCACTCTCTTTCTCTTATATCCACTCGATAATCACTGTTAAATCCCCTCAATCTACAGCTTTTCTGATGGATCTCCCTGATTCAAAGGTAATCGATTACTGATTTCATTCAATTTCATTTGGATAGTGCTAAATCAATATATGAATTGCAGCAACCCAGATCTACAGATCCGAGCGATACAGAAACCCCAGATTCGAATTCAAATTCGAATTCGAAGCCGAATCAGATCAGAACTTGCTCCGAGTGCAAAACCACGAAAACCCCCGTTTGGAGAGTCGGCCCTAACGGACCCAAGGTAAGTTTGGTTTTTGATTGCTTTACCGTGCTAAAGATCTGTTTTTTTGGAAAAGGGTAAGTGTTGATTTTCGATTTGATGTTCGATTTGATACTCGATTTCAGACGCTGTGCAATGCTTGTGGGATCAAGTACAGAAAGAGGAAAAGGGAAGTGAAAGTGAAGGATATAAATAGGAAAGTGATCGAATTGAAAAAGAATTGCATGTTGAGGGAGGAAGAGCAGGCCGCTTTCGTTTTGATGGATTTGTCATCCGGTTTGATTTATACTTAATCCATTCATTTGAGCTTAGGTTAATTGTTGGTAGTGATGTTATGGTTTTGGTTGATGTAATATTTTTTCTAAATAAACACTTGTGCGTTTTACTGCTGTAAGGGATTGTTTAAACCCTAGAAATTAGCCTGGGCTTAAATTGGATACTTTATAAGAAAAGTAACTTCTTTCCATTTCAAGTGTTGAATTGGTATGTATGATGATAATACCAAATCATTGAACGTGTAAGTATAACATGTCACATATCATTATGTATTCTAGTTTATAGAAACAAAATTGTAATCATCATTATGATCAGTAAGGTATGTAAGCCAAAACAGAGGAAAATTTTCATGGTGAAGAATGGATGTCATGAAGGTTGAATGATACATGTTTTTGCATCCACATATCAAATATTAGGCGTATGCAAATCAAAAGTTTAGCACATTTGAATTCCTAGTTCAGAGCATTTCTTGTTTTGTTAGAAATTAGTTAGATTATTTGAAATCCTAATGGTAGTTGCACTTCATAATATTGCATACCATTATGCAATCCAAATTTCTGATTGAGTGGTCTAAATTGATATGCGAGGTATAGCTAGAAACTAGAAAGCGCTATGCCATTATTATATTATAATAACATGGTTGGGAAACGTCCAAGTTTAAGCCATTATTTTCATGTTATTAACCTAATTTAGTATTGATTTATTTTTTGAACTACTAAATTCAAATTTTGATTCCAGTTGTCTTATTTATAATTATATATGTTGGATGTAAATTTAATGAATAAAATATGAGTCACGTCCTTGTGTTGTGTACTACAGCTACATACGCCCATTTACTTTGCTTTCTGTTTCATTGATTTAATTATTGGTTTGGAAAGGGATGGGAGTAATGTAGGCACAGGGAGTGAACACTTAAAATGTTGGGTTTAATGATCCGATAATCTGCTTGCATAAATTAGGGCTTTACTTTAGTTTTGAACAGCTCTCGCACTATATTAAAATTCTGTCTATATATGTACGCTTTTAATTATAATTATAAGCACTTAATATTAATTAAGTTATTGGAAATAAACTTTTTGTTCAAATTTCTACCAAATGGATATTGCCATTTCCAAATTCAACTTGTATGAAAAACGAAAAGATGAAATATACATATTGAGTGTGTTGGAATAATACTGGAATTATGTAAAAATGTTTTAACTTATTTGTAAATATGTTAATACTGGATTTATTTTCATGATCATTTGCAAGAAGCTTATTTTTAAAACTTTATTAAATATATGTATACCTTTATATCTTTAGATGGATATAGTGTTTTTTTAGTTAAATTGCTAGTAAAAGAATTCTTTCTACTGTTCGTTTTATATTTTACCAATTTGGCGGTCGCTTTAATTTTATTTAGTGCATTTGTTTATTTTGAAGGAATGTTTAGTATTCTATTTTGTGGAAGTTCATAAAACACTATGATTCTGAAATTGTGTGTTTAGTATTTTAAACCTTTGTTATAGTTGAGAAATAAATGAATTGAAATATAAACGTTCAGTGTGTGTAATGTCAAATTTTGATGCAATGACAATTAATTTTGATTATTTTATTTGTTTGTTTTTAGGAGTTTGGGGTAAAAAGAACAGATGAAATGGGATCATGCATGATTTAGAAACGAGGCCAAGGAGTTGCTTGCAAAGAAAGAGAAGATTGGTGCTTCACTCATTACATTTTTGCTCTATGTAAAATGGTGCATGACATGGGCTTCAAAATGTGGACCATATTAAACATGAAAATTTTAAGCGTAATATGAAAAATGTAGTGTATGTAGATTAGTATCATAAATATCATGATCAGAAAAGGAGATTGCGAAGAGTTAATCCATGTTTTTCATTTCTTCTCCCAAAGTGGATAAATAGAAAAAGAAATTGTCTCAATGAAGTTGTTTTGGAGAAGTAAATTTGTACACGCTTTCAAGCTATTCCTCGTTGATATTTATTTTACAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020254910.1	5.9e-17	GATA transcription factor 16-like isoform X2
Swissprot	Q8LC59.2	3.2e-12	GATA transcription factor 23
trEMBL	D6MJX0	1.4e-15	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G49300.1	43.12	1e-13	71.6	GATA16	GATA transcription factor 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G05805	AT5G49300.1	109	35	4	25	106	27	135	43.12	1e-13	71.6
AfisC8G05805	AT5G26930.1	38	9	0	33	70	25	62	76.32	2e-13	70.9
AfisC8G05805	AT3G06740.1	112	36	4	31	109	38	149	38.39	3e-13	70.1

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	36	69	61.4	3.9e-17

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0009416	P	response to light stimulus
GO:0009735	P	response to cytokinin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010187	P	negative regulation of seed germination
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0030154	P	cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network