result

Gene information

Detail information of AfisS1222G00001

Location

Gene	Chr	Start	End	Strand
AfisS1222G00001	scaffold1222	43037	45905	+

Sequences

CDS

>AfisS1222G00001
ATGAAAACAACGTTGGGTTCTTCCAGATCATCAAGAGGAAAGAAAAAGAAATGCTTAAACGACCAAGGAAAAGGAAACGATGAGCATGAAGGCAAATCTGTTAGTGAGAATTTAGGTACTGTAACCGAAGAAGATCATGTTGGGAATGAAAATCCCTGTAAAAAGCCAAAACATTTCCATCGTACTCGTCATTCCCAAGAGCAGATTCAAGCCCTTGAAGCTCTATTTAAGGAATGTCCTCATCCCGATGAGAAACAAAGGATCGAGCTTGGTAGGAAAATTTCCTTAGACCAAATACAAATTAAATTTTGGTTCCAGAATCGCCGCTCACAGCTGAAGAGACAAATTGAGGATTATGAAACTACACTCCTTAAAGAAGAGAATGAAAGGCTTAGCATTGAAAGAATTGCCGTAAAAAATGCAAAGGCAAACCCCATTTGTGGAAAATGTGGTGGTCGTCTGAAACTTAAAGATCCATCCACAGAAGAACTAAGTCTTATGATTCAAAATGCACGACTAAAATACGAATTTAACAAAAATCGTGCACTATGTTCAAAGTTTATTGACCCACTCACTGTTGATCCAAAACCAAGCAATACTTCTGAATCTGTTGATCCAAAACACCCTTTATTGGATCTTGCTGAGAAGGCAAAGGAAGAGCTTCTCAAAATGGTGCAAATGGGCGAGCCTTTATGGATTAAGGATATTGGCAGCAGGAAAGAGAAACTGAATTATGAGACTTACAAGCAAATTTTTCCTCGGAGCATTGGAACGAAGCCTGCTGAGTTTGTTTATGAGGCCACTAGAGATATGGGTACAGTGACCATCAGTTGCATGGAACTCGTCGAAATTCTCATGAATGCTAAACAATGGGCTGAAATGTTTCCAAGCATGATCGCAAGTGCTACAGTCATCGACATGATCACTGGTGGTGCTGCTGGGACTAGAGATGGTGCACTTCAGCTGATGAATGCGGAGTTTCAAATCCTTTCACCAGTCGTTCCTATTCGTGATGTTAGCTTTCTTAGATATTCTAAGAAGCTTGGAGAAGGAGTTTGGGTGGTGGTTGATGTGTCTGTAAATGGAGAATTTCAGTCTGCCATCAACTGTAGGAGACTTCCCTCAGGTGTTCTTATTCAAGATACGCCTAATGGTTACTCCAAGgtcaaacctgggttagagcacacagaaacgattgaaaaaggagttcacgagctctttacatccaatgctccgctcaggaatgggacttgggagcccaatgtttgcttttctgtctcttcagagacgctgggaaggcctaggctttga

Protein

Gene

>AfisS1222G00001
ATGAAAACAACGTTGGGTTCTTCCAGATCATCAAGAGGAAAGGTCTTTTTTTAACGTTGTGTACTTCTAGAGATGTGTACTTTTGAAAAAGATTTGTTTTTTATGCAATTATAGTTGATTTTAGAGATGGATTTTTAATTTCAATTGCACCACCTTGTTTTGTGTAGAAAAAGAAATGCTTAAACGACCAAGGAAAAGGAAACGATGAGCATGAAGGCAAATCTGTTAGTGAGAATTTAGGTACTGTAACCGAAGAAGATCATGTTGGGAATGAAAATCCCTGTAAAAAGCCAAAACATTTCCATCGTACTCGTCATTCCCAAGAGCAGATTCAAGCCCTTGAAGCGTAAAATTTAGCCTTTTTTTAGTTTTTCTTTCATATATATCAGTTGCATGCACTTTCCCTTTTCTAGTCGATGTATAATCATCGACTTTATGCAGTCTATTTAAGGAATGTCCTCATCCCGATGAGAAACAAAGGATCGAGCTTGGTAGGAAAATTTCCTTAGACCAAATACAAATTAAATTTTGGTTCCAGAATCGCCGCTCACAGCTGAAGGTAACAATTAATCGCGTCGACCTTGTAAAAATAAATATGTTTAATGTTGTCATGTTTAGCATGTCTAAAATATAGTTGATATTAATAGAGACAAATTGAGGATTATGAAACTACACTCCTTAAAGAAGAGAATGAAAGGCTTAGCATTGAAAGAATTGCCGTAAAAAATGCAAAGGCAAACCCCATTTGTGGAAAATGTGGTGGTCGTCTGAAACTTAAAGATCCATCCACAGAAGAACTAAGTCTTATGATTCAAAATGCACGACTAAAATACGAATTTAACAAAAATCGTGCACTATGTTCAAAGTTTATTGACCCACTCACTGTTGATCCAAAACCAAGCAATACTTCTGAATCTGTTGATCCAAAACACCCTTTATTGGATCTTGCTGAGAAGGCAAAGGAAGAGCTTCTCAAAATGGTGCAAATGGGCGAGCCTTTATGGATTAAGGATATTGGCAGCAGGAAAGAGAAACTGAATTATGAGACTTACAAGCAAATTTTTCCTCGGAGCATTGGAACGAAGCCTGCTGAGTTTGTTTATGAGGCCACTAGAGATATGGGTACAGTGACCATCAGTTGCATGGAACTCGTCGAAATTCTCATGAATGCTGTAAGTTGAATTTGCTTTATTTTTTCTTTTTCTTTCAAGTTTATTATTTTGTATGATGTAGTTTATAGCGGACGTAATTTAATTATTTCAGAAACAATGGGCTGAAATGTTTCCAAGCATGATCGCAAGTGCTACAGTCATCGACATGATCACTGGTGGTGCTGCTGGGACTAGAGATGGTGCACTTCAGCTGGTGATCAGTTTATTCAAACTATTTTATTTTTTTCCTCGAAGCCTAGTATTTAACCCAATTTTTCCTGAACTTTTTAAGGATATATGATTGTCTTATACATCTGGATACTGTATTCTTTTTAGATGAATGCGGAGTTTCAAATCCTTTCACCAGTCGTTCCTATTCGTGATGTTAGCTTTCTTAGATATTCTAAGAAGCTTGGAGAAGGAGTTTGGGTGGTGGTTGATGTGTCTGTAAATGGAGAATTTCAGTCTGCCATCAACTGTAGGAGACTTCCCTCAGGTGTTCTTATTCAAGATACGCCTAATGGTTACTCCAAGGTATATTAATTGTTTATTGGCGATATACATGCATCACTGCTTTAGGGATTCTTTCGCTGTTTATCAATGGAAATGTGTTAAATGTAGAGTTCATGTTTTGTCTAGGAAGTTCTTCTGTTGAAGATTACTGGATAAAACTATTATTTCCCTTGATACCTGGTAGAAATCATTATTTCTATGCCATGTTTGGATGTTGACCTACTCTTTGAATTCAGTGTCATTTACAATGAAATTTAATGCAACCTACTACATATATTAATCCAGCTACCACCATTCAGTTTACATCAATATTTTCTGTTAATTTCATACAACTTATTGAATTATTCAGAAGGAGCTCTTGGTTTGGGAGATTACAGGCTATGTGTCTGACTCCCCATGATCAATTGAATATGCTTTGAAAATAACTCTTTTTTCTAAAAGATAACCAAGAAGTTGACATTAAAGCTGGCCCAATAATTATTGTAGACAAATATTGAAATGCTTTATCTGAATCAAAACTTCATTGACATTGCATGAATGCCTACTTCCAATTAATATTTTTTTAGTACTTTTAATACCGTTCTTCCTCTATAAGAGATCAATCTTACATTCTACTATATTCTATTCTTTAATGTCATTCCtAGCTAAACACTATTATTTTGTTCTCTAAAAACATTCATAGtaAACTGTCAAGATCACCTACCTGCTAATTTGTCAATGATACCAAACTAGTGTAAAtaGCGTGGCCcCCTCTTTAGTAAGAGTATACAATAGGTCATCTCGGTCCAAATTTGTCTGCATTAAAGCCTCGGATTCatcagcaatgggctccacactagcaatattctatgtcgacccgcaagggatcttacgttgccataaagctgtggcatatttctattcaaatttttacatgcaatatattagggaggtacaaatgctaaatatacacaaaaatgggtataagttgtgacaatttggtcccacatagtaggaaattaaacgttcaaattgtactaaaagctaagcaataaatactttgaaattttttttggcaggtcaaacctgggttagagcacacagaaacgattgaaaaaggagttcacgagctctttacatccaatgctccgctcaggaatgggacttgggagcccaatgtttgcttttctgtctcttcagagacgctgggaaggcctaggctttga

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262629.1	4.8e-99	homeobox-leucine zipper protein ROC5-like
Swissprot	Q6EPF0.1	7.4e-81	Protein RICE OUTERMOST CELL-SPECIFIC 5
trEMBL	A0A5P1F9F4	3.4e-99	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G61150.1	42.73	1e-92	337	HD-GL2-1;HDG1	homeodomain GLABROUS 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisS1222G00001	AT3G61150.1	433	189	7	30	407	85	513	42.73	1e-92	337
AfisS1222G00001	AT4G00730.1	419	194	6	27	407	107	518	42.96	2e-92	336
AfisS1222G00001	AT4G00730.2	419	194	6	27	407	107	518	42.96	4e-92	335

Ortholog group

Species	Genes
Allium cepa	g219958.t1
Allium fistulosum	AfisS1222G00001
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	60	114	62.8	1.7e-17
PF01852.16	START	Domain	213	407	118.8	1.8e-34

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009828	P	plant-type cell wall loosening
GO:0009845	P	seed germination
GO:0009913	P	epidermal cell differentiation
GO:0010091	P	trichome branching
GO:0042335	P	cuticle development
GO:0043481	P	anthocyanin accumulation in tissues in response to UV light
GO:0048497	P	maintenance of floral organ identity
GO:0048765	P	root hair cell differentiation
GO:0048825	P	cotyledon development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network