result

Gene information

Detail information of Asa0G00226

Location

Gene	Chr	Start	End	Strand
Asa0G00226	scaffold11170	10159	15988	+

Sequences

CDS

Protein

Gene

>Asa0G00226.1
ATGAATTCTCAAGCAATTGAGAAGAGGAGAGAGACTCTTGCTAGTATGTGTGATGAACGTGCTAGAATGCTTCAAGATCAATTCAATGTTAGCATGAATCATCTTCAAGCTTTGGCTATTCTAGTATCCACATTTCATCACGCCAAAAATCCTTCAGCCATCGATCAGGTAATGATCAGGTCTActaaatattaaatgatttatgaACAAAGATTTCATTTCATCAAGTGTAATGCTTTGCCGGCCTCCTAACCGGAATCATCAATGTTTATCTAAAAATATATTGCTTGCAAAATATAGTCCATCTAGTAAAACATCAAGATAAGAATGAGAAGATGCAACATTTGAATTTCAGTAGTGATATCTCTTCTTTAAAACAAAGAACTTCGATAGTGATAATGGTTGTCTTTGTTAATTACCCTGATGTAATGGCTCTATTCCTATACTTGTATGACACAATATGGAAAATTTCACCCAAGGTTTTTTAAAAGTTAGCAGTGTTAGAATGTCAGATTGTTGTCATTATAGGGAGTTAATTATGTTGAGGATAACTACCTACAATGATAATTCAAACGAGAAATAAGTAGGACGATGAAGTTGCTTGCTTAAATAGAAATATAGGATGGTGAATGACACTTGTATAGAGGGAACAGCAGAAATATTATCATACATCTACACAGTAGCCATTTTGAGCAGTTTACTATTTTGAAGTTGATGTTAGATAATTTATGTGAAAACTTATTGTCAAAATATTCTAAAAAGATTATATGGAAACTAATGAATGTGCAGACAACATTTGCAAGATATGCAGAAAGAACTGCATTCGAAAGACCATTGACAAGTGGAGTAGCATATGCTGTGAAAGTTTTAAATTCAGAAAGGGAAGAATTTGAGAGGCAACAAGGATGGAAAATAAAGAAGATGGATTCCCAAGACCAACCTCCGGTTCGTGAGGATGAGTCAGCTCCGGAAATTCAGGAGACTTCACCTCTTGAAGAAGAGTATGCTCCTGTCATTTTTGCTCAAGATGCCTATAAACATGTAGTATCTTTTGACATGCTTTCTGGAAAAGTGAGTTTCTTGATCATGATATTCTTTGTCTTATATTCTGTAGGAATAAGAACAAATAAATGAACAGGGCCTCTTTGCTATGttatctttgtttttgtttttgactTAATTATACCTATAGTAATCGATCCAAAAATCTTTGGCTGcacatctgattttttttttcctccGATATTATTACTAGTCATTGGCATGCTACCTTCGTCTTCGGCATGCAAAATAATAATTCATCGGAAGCGTAAATTTTGAATTCAGTGTCATGAGCTCAAGCATACAAATAATGGCAAATCATATGGTTTTTGAACTCTAATTTAAAACATTATGCAATCCTTTATCACTTAACCTAGTAACTTTACCCATTTACTAAGattttatttttgtagttttaCTTGTGCTAAAATAATTATAATCACACAGGAAGATCGCGAGAATATCCTACGAGCTAGGGCCACAGGAAAAGGAGTTCTCACGGCCCCCTTCAAGCTTTTAAAGTCAAAGAGACTTGGTGTTATTCTCACTTATGCTACTTATAAATCAGAGCTTCCTTCTAATGCAACTCCAACCGAACGTATCCAGGCTGCCATTGGGTAAGAAGTAAATTAAAGTTCACTAGTGatccttttgttttatttcctGAAAATTATCTCCGGTCTTCGGATTTATTTGTCCATGTGTATATACTTTTTCGTGGGATTTATTAAAAGATAAACCTGCCCCAAACTCAAGGGGTATACCATTTGACAAACCATTCGGATGAGGAATGAGACAAACAATCGACGCTTTAATTGGGCACACTAAATCTTTGTCCTAATACTCCAAAATGCGAGACAGAGGCAGGCATTTACCTAGGAGTTTAGCAGTTCAACCTAGTTTTACCTGATTAAAATAAACCGATGAATACACCGAAAACCTCATATGACATTACTTGATCATGATTACAAAGCTTCATCAGTCAATAAGTAAAACATAACTACTCAAATGTTACTGGGTTCAAGTAAAACTACAACATATATACAGTGAATGTGTTTCTAACTTTCAGACTTCATGCAGAGGGCCGAAACAATTGAAATTTTACATTGAATGGGTTGTatttgaacttaaattcagagtttattatttacaaaaaaaaggCGTTGGAGAAACATTAATCTGATAGGTTGTTACTGTTTTGTAGGTACTTAGGTGGAATCTTTGATATAGAGGCACTAGTTGATAAGCTACTTCATCAACTTGCATGCAAACAATCAATTATGGTGAATGTGTATGATACTACAGATCCTTATAATCCAATTAGCATGTATGGAACAAATGTGACAAGTAATGGTATCTATCACAATAGCACCCTTAATTTTGGGGATCCATTGAGGAAGCATGAGATGCATTGTAGGTATGTTGTctattttatgaatatatgcagTAATCGAGTTTTTTTTATGCAATTTGACTTTCCTggttattttcattatatatgcGTCGAGGGAATGTTGAATAGCATTATGTGGTCTTATTTGGCCTTCACCCAAATTCTTCAAAGATACAAATTAAGGCTTTCTTTTCTTAGTCAAGCTGGTAACCACATATTTATATTCATGGCAATTCCTGAATTACGTAGATTCACCTTTATTTCAAAGATAAAATACAAAATGTGATAAATGGCCTTGCAATACAAGTTGTTTATATTGATCTAAGCATGTGTATGAAGGAGACTTACATTCTCGAACAGCGGAAGTTTTCGCTAATAATTCTGTTATGCTTATTCAGATTGCAGTTATATGTAAACTTTGCTTGTTATTTTACTCTGTATTGTTTAAACAGGCGATTATGGAATTCTCAACTTTATTTTATCCATGTCATGTTCATTCTGTTCTTGATATTGTTTGCTTCTGATGTAATGATACTTTGAGCTTCTCAATATCAacaaaacaaagtttgatttttattgatGTGTAAATAAACATTATAGTTTTGTTTAAGTTCCAATGTTCGTTGCAATTTGTTAATATATCTCAACAGACTTACACAAAGACCACCTTTGCCATGGCTAGCAATAACAACATCAATTGGAACTCTTGTGATTGCATTACTAATTGGATACATATTTCATGCTACTGTCAATCGTATTGCAAAAGTTGAAGATGATTATCGTCAAATGACCGAACTAAAGAAACGAGCCGAAGAAGCAGATGTTGCAAAGTCACAGGTCCCTGTTCCAATTTAtacaaaaattctggaaaatttcagTTTTAGACTTccaaaaacaatttgtttcaagTTTATAAGCTTCCTTTCAAACTTAATATGAGAATAGTCCTCTTTTTCCATATTGTTCTTTTGTACATACGCACTTTGAAAAGGCACATGTACAAATTTGTATTGTACATGCACACTTTCAAGTTTCAAAGCGAGCAAGTATATTAAAAAGAATTTGTGCATGCGCATGTACGAAGTGCGCATGTACGAAAATGCTGAATAGTGAAAAAAGGcattttttgttttttcattatAAGTTTGAAATGAAGTCTTAACTTGAAATAAGCTCTCTTTTTTTTGGTGGCCTAAAACTAAAATTTGTCCAGAAATATATTATATCATCTGGCCTGTCCATGTTTTGAGCTGAGTTTCATCTTGGTGCAGTTTCTAGCAACCGTTTCTCATGAGATTAGAACTCCCATGAATGGTGTCTTGGGTAAGAATGCTTCAATCCAACATCCATATTTCCTATCATCCTGTTTATTTTTGCATTGTATCATAGTTCTTTTTTTTCCATGGGATTCTAACATAATTTTTTATGGTGATATCTATTATCGTGCAGGTATGTTACAAATGCTTATGGATACAACTCTTGATATCACACAACAAGATTATGTGAAAACTGCTCAAGCTAGCGGAAAGGCCCTTGTTTCTCTAATAAACGAAGTGCTTGATCAAGCAAAAATTGAGTCTGGAAAGCTTGAGCTTGAGGCAGTGCCTTTCGAACTGAGAACAATTCTAGACGATGTGCTGTCACTTTTCTATGTTAAATCTCAGGAGAAAGGAATTGAGGTAGtgtaattttattcatcgcatcacagtatataacaatataaatttctATAGCTTAATCTTTGTCCATACGTGTTTCTTTATGCAGTTAGCGGTGTACGTCTCCGATCAAGTTCCAGAAGTTTTAATCGGCGATCCAGGAAGGATAAGGCAGATTGTCACAAATCTCATGGGAAATTCAATCAAAGTAGGCGCAGTTAACTTTATTTTGAAAGGTTTTGAGTACTTTATAACATATTTACGTTATTTTCTAGTTCACCGAAAAAGGTCACATCTTCGTTACCGTCCATCTTGTTGAAGAAGCGATGACTGACTCGTTAGAGGTTGACTCCGGATCCAGATCATCAAATTCACTGAGCGGTATGCCCGTTGTAGATAAACGGCGTAGCTGGGAAAACTTTAAAGCAACTTTTCAAGAAACCACGGCCTATAAAAATGATTCAGACCTCATTAATCTTATGATATCTGTAGAAGACACAGGCGTTGGCATTCCTCGAGAAGCTCAATCTCGAGTTTTCACTCCATTTATGCAAGTAGGCCCCTCAGTTTATAGGATTCATGGAGGCACAGGAATTGGACTAAGCATTAGCAAGTGTTTGGTTGGGCTTATGAATGGAGAAATAGGATTTGTAAGTGAACCACATGTTGGTTCTACCTTCAGTTTTACCGTTGTTCTTTCTAAGGCAAATAATAATTCTAGCGATTTCAAATCATCCGAATTTCAAAGTATGAAAGCTTTGGTTATAGATCATAGATTGCCTCGTGCAAAAGTTACTCAGTATCATCTTCAGAGGCTTGGAATTCAGTCCATATCATTGATCAGTGTAAAACAAGTTCTTCAAATTAGCAATGAATCGTTTGTTCCAAATATAGTTCTTGTTGATAAGGAAACTTATATCGAAGAAATAGATCTTTGGCCTATGTTTATGagttctttaaaaaaattcaactcCTCAAATTCCCTTAAAGTATTCTTACTTGCAAATCCATCTACTTCTACCACTAAGAATTATCCAGTGAACTGTATGCAATTTATCTCTAGTGTAGTCACAAAACCTTTAAGAGAAAGTATGTTGCAAGTTACGTTACAAAGAGCTATGGGTAGCGAAGATAAAGATATACTAAGAAATGGTGGGCAATCTAGTTTGGCGTTAAAAAGCTTGCTTCTTGGTAGAAAAATATTGGTCGTTGATGACAATATTGTAAATCTTAGAGTAGCAGCTGGTGCTTTAAAGAAGTACGGAGCTGAAGTAACTTGCGCAAATAGCGGGAAAAAAGCAATTGATTTGCTCAAGCCACCGCATGAGTTTGATGCTTGTTTTATGGACATTCAAATGCCTGAAATGGATGGGTATGAACTGTATAGCTTTtggttaatttacatttttttgttttcaGGAATTGAACATAGTTTCTGAATTTTTTTGTCTGATCTAATTCTTTTGTTATCAGTTTTGAAGCTACGAGAAGGATTCGTGGAATGGAGAAAAATGTATATGAGAGCATAACACATGGAGAATCAAAGCTaggaacatataaaaatgtactgcATTGGCACATTCCTATATTAGCCATGACTGCAGATGTAATCCAAGCAACACACGAGCAGTGTTTAAAATGTGGAATGGACGGCTACGTGTCAAAGCCATTTGAAGCAGAACAACTTTATCAGGAAGTAGCTCGGTTTTTTAAGTCAAGCACAAAAAGAACAAGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261089.1	0.0e+00	probable histidine kinase 3
Swissprot	A2WYI4.1	0.0e+00	Probable histidine kinase 3
trEMBL	A0A5P1F1I7	0.0e+00	histidine kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G27320.1	66.20	0.0	1226	AHK3;HK3	histidine kinase 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
Asa0G00226	AT1G27320.1	926	296	7	1	916	114	1032	66.20	1226
Asa0G00226	AT5G35750.1	936	358	13	2	913	254	1174	57.59	1051
Asa0G00226	AT2G01830.1	945	364	11	8	913	133	1049	54.39	974

Ortholog group

Species	Genes
Allium cepa	g323338.t1
Allium fistulosum	AfisC1G03878
Allium sativum	Asa0G00226.1
Arabidopsis thaliana	AT1G27320.1
Oryza sativa	LOC_Os01g69920.1; LOC_Os01g69920.2; LOC_Os01g69920.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03924.10	CHASE	Domain	53	249	129.9	9.1e-38
PF00512.22	HisKA	Domain	337	402	63.7	1.1e-17
PF02518.23	HATPase_c	Domain	449	609	96.3	1.3e-27
PF00072.21	Response_reg	Domain	776	908	72.0	3.9e-20

Gene Ontology

Accession	Ontology	Name
GO:0000155	F	phosphorelay sensor kinase activity
GO:0000156	F	phosphorelay response regulator activity
GO:0000160	P	phosphorelay signal transduction system
GO:0016020	C	membrane
GO:0007165	P	signal transduction
GO:0005524	F	ATP binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0016310	P	phosphorylation
GO:0016772	F	transferase activity, transferring phosphorus-containing groups

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14489	AHK2_3_4; arabidopsis histidine kinase 2/3/4 (cytokinin receptor)	EC:2.7.13.3	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network