Detail information of Asa0G01154


Location
GeneChrStartEndStrand
Asa0G01154scaffold15678463085237-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrTEY72684.19.5e-05MADS-box transcription factor, plant
SwissprotQ10CQ1.22.7e-04RMADS211
trEMBLA0A5N5FQA61.2e-04Flowering locus C-like protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G45660.160.002e-0750.8AGL20;ATSOC1;SOC1AGAMOUS-like 20

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag451958.t1
Allium fistulosumAfisC2G03453
Allium sativumAsa0G01154.1; Asa6G01457.1; Asa8G03429.1; Asa8G03432.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain22634.59e-09
PF01486.14K-boxFamily276831.41.5e-07

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0046983Fprotein dimerization activity

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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