Detail information of Asa0G02421


Location
GeneChrStartEndStrand
Asa0G02421scaffold226561702621883-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010936285.17.5e-266ATP-dependent DNA helicase DDM1 isoform X2
SwissprotQ9XFH4.15.8e-231SWI/SNF2-related matrix-associated actin-dependent regulator of chromatin DDM1
trEMBLA0A6I9S1M15.4e-266ATP-dependent DNA helicase DDM1 isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G66750.161.800.0 829ATDDM1;CHA1;CHR01;CHR1;DDM1;SOM1;SOM4chromatin remodeling 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag303421.t1; g420178.t1
Allium fistulosumAfisC2G05935; AfisC5G05958
Allium sativumAsa0G02421.1; Asa1G04574.1; Asa4G05535.1
Arabidopsis thalianaAT5G66750.1
Oryza sativaLOC_Os03g51230.1; LOC_Os03g51230.2; LOC_Os09g27060.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily98392221.31.3e-65
PF00271.28Helicase_CFamily41752870.61.1e-19

Gene Ontology
AccessionOntologyName
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0004386Fhelicase activity
GO:0005524FATP binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K19001HELLS, DDM1; ATP-dependent DNA helicaseEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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