result

Gene information

Detail information of Asa0G03351

Location

Gene	Chr	Start	End	Strand
Asa0G03351	scaffold27072	30783	32588	+

Sequences

CDS

Protein

Gene

>Asa0G03351.1
ATGTTCAAGCAGACGGCAGAGAATAATAGAAGATTATGTAATTCGGTAGAGATGAACGGTGCTGTCTTGCTTTCAAGAGATCCGAAGCCGAGGCTGAGATGGACGCCCGATTTACATGATCGGTTCGTGGATGCAGTTTCCAAGCTTGGGGGACCAGATAGTAAGCAGCCTTTGATCACTTTCCATTCATACAGTAATATACATAGCTCCAAATATGCATGTCTAGCAAGTATGAAACTGAGGGTATATGCATGTACATTTCTTTCATGCTTACCTTAGTATTTTGTAGCTTTGTATTGAATAGTCTCTTAGCATTCATTTTGAACTTCTCTACGAATAATGAATATTAAGATTCATTTTGATTTGCTTATTTGGTGTATAATTCAGTTGTGAAATGATTCAAGATTACTTCCCGATTCAGTTTTTAAAAACGTACTAGTGTTTTTCATATACTTCTACCAAACTGATTGACAATAACTGTAGCTTTATTGGAAAGccagaatttcaaaattatacgGTATCAGTttagatataaattaattattttggccGTCTAATGGAGGTAGAATCCAAAGCAAGAGAACATGCTTGCAACAATGAACAAAAACCCTGTTAAACTAATGTAGTTCAATGAATCTATGCTTTGTCGGCAATACTTTAGTCATGCAAGTAACATGTCAGTTCTGGTACTACATGTGAACCCTTTTAACATGTAAACGTATAACCATAAAATACCTGCCACAAAATTGATAAATGCAGAAGCAACGCCGAAATCAGTGCTGAGAATGATGGGCACTAAAGGGTTGACACTCTATCATCTCAAGAGTCATCTTCAGGTGATTTCCCTTTCCAGTCTTCACATTATCTTTCACTTTCTTCCACTTTACAATTGTACTATATTTCTGAGCTATAACCACTTTTTGGTTCCTTTTTTTACTGCAGAAATATAGACTTGGAAAGCAATCAAGTAAAGATACTGGACCTGAGCCTAGTAGAAGAGGTAACTAGTTCTtatcacaattttttttaattgatatatgCAATCTGTAAATGATAAAAAAGactataatgtaaataagaaatctGCATCACtgtgtttgatttttaaaatacagGGAGCTCCAGTGGATATACTTCTGCCATTACCGCAAATGTTTCCGGAGTTAACTGTGCTAGGTAGGTTTCTTCACAAATGAATAATATGATCAGAATATTAATTACCATGAAAATGAGAGTACATATCCTTTTCTATTACTGTACAGTGAATTGCCATTATCATCAGAGACTTTGAAATATCAAATAGAAGTGCAAAAAAAGCTGCAAGAACAACTTGAGGTGAGTCTTTTCTGATTCGTATTACAAAGATGGGAATGAAAAGGATCATTCTACAGGGACAAAGCCGACTGTGCTAATCATATGAACCCTTCTCAGGTACAAAAGAAATTGCAATCGAGAATTGAGGCACAAGGGAAATATCTACAGACAATATTAGAAAAAGCGGAGAAAAGTTTAAGCTTCGAAGCCAATAATACAGGAAGCTTAGAAACTACAAGAGAACAGTTAACAGATTTTAATCTAACACTATCGGGTTTGATGGAAAATGTTAATGAAGTTTGCGACGAGAGAAGAAAAGAAACTGCCGGTATCCAGCTTTATGATATCGACAAcgaagaaaataaaagggaactaGTAGCTACTAAATTTGCATTACATCCCCTTGATCttaatatgaatgaaaaatatgatttatttggtGAAAGAGCAGGGAATGAACTAGATTTAGGAATGCACCTGCAGAGCAGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010918102.1	2.4e-61	myb family transcription factor PHL11
Swissprot	C0SVS4.1	5.9e-36	Protein PHR1-LIKE 11
trEMBL	A0A6I9QZV9	1.8e-61	myb family transcription factor PHL11

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G45580.1	46.88	4e-52	201		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa0G03351	AT5G45580.1	256	97	8	23	250	1	245	46.88	4e-52	201
Asa0G03351	AT4G13640.1	185	80	2	18	195	26	207	51.35	1e-47	186
Asa0G03351	AT3G24120.1	182	82	3	19	195	31	211	51.65	9e-47	183

Ortholog group

Species	Genes
Allium cepa	g38449.t1; g425412.t1; g455484.t1
Allium fistulosum	AfisC5G05389
Allium sativum	Asa0G03351.1
Arabidopsis thaliana	AT5G45580.1
Oryza sativa	LOC_Os02g47190.1; LOC_Os04g51130.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	31	82	39.3	4.8e-10
PF14379.3	Myb_CC_LHEQLE	Family	125	168	76.4	9.3e-22

Gene Ontology

Accession	Ontology	Name
GO:0003682	F	chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14317	NUP214, CAN; nuclear pore complex protein Nup214	EC:-	RNA transport	ko03013

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network