result

Gene information

Detail information of Asa0G03544

Location

Gene	Chr	Start	End	Strand
Asa0G03544	scaffold28085	49317	51282	+

Sequences

CDS

>Asa0G03544.1
ATGCAACAAAAACTTGAGTCCAAACCACCAAGTATCACAAAAGACAATCAAAAAATTCCACAAAAGCACAAATCGGGTGGTTTAAGAAGCTTCTTCTCATGCAAATATCACCAAACCACAATCGAATCATGCAAACAAGGGAAGAAAAAGAAGAGAGTAAACCTTATTACAGGGTGTTCTGTTTCCCTCTGCAACATAAAAGAAAGCTCAAAAGTTAAAGTTTCTTCAACAAAAAGCAATTCAGTTGCTAGTGCAACTCCTATTTCTACTTGTTCTACAAACATATCGAGTTCTATAACTTCGTATTCTTCTTCCTCAGCATCATCATCATCTGGTTCTTTTAGAGGAATGCATTTAAGAAAATTTTCAGGGTGTTATGAATGTCATATGGTTGTTGATCCTATTACAGGAATTTCAAGTGTCCCTTCTCTTAGGAGATGTAATATATTTCCATGCCCTGAATGTGGGGATATTTTTGGGAAGTCTGAAAGCTTGGAGATCCATCAGACTATAAAGCATGCAGTAACAGAACTAGGCCCAGAAGACAGCAGTAGGAACATAGTAGAAATAATCTTCAAGTCAAGCTGGCTAAAAAATCGCCCTTCCTCATACCAAATCCAGAGAGTCCTCAAAATACACAACACTAAAAACACAATCTCCAAATTCGAGTCATACCGGGACTTCATAAAACTGAGAGCCGTCAAATTACCGAAAAACCACTCTAGGTGCATCGCCGACGGCAACGAGCTCCTACGGTTCCACAGCACAACCTTGAAATGCCCTCTCGGGCTTAATGGGTCGAGCAATCTATGCATCTCGACCCAGATCCCACAGAAGTGCAACGTTTGCGACGTTATAAAAGATGGTTTTGTCCCTGATGAAAGTGGTGGCATTCAAACCATGGCTACGAGCGGTCGAGCTCACGATGTTGTGAAAGTTGGAACGAATGGTGGCAACGAGAGGGCGATGATTGTTTGTAGGGTTATCGCCGGAAGGGTCAGCAGTGATGACAGCGTTCGTGAAAGGGGAGACGAGTTTGATTCATTTGCTAGCAATGTGAGCGTTTATTCAAGTTATGATGAGTTGTGTGTGTTTGATTCTGAGGCTATATTGCCTTGCTTTGTGATCATCTACAAATGCTTCTAG

Protein

Gene

>Asa0G03544.1
ATGCAACAAAAACTTGAGTCCAAACCACCAAGTATCACAAAAGACAATCAAAAAATTCCACAAAAGCACAAATCGGGTGGTTTAAGAAGCTTCTTCTCATGCAAATATCACCAAACCACAATCGAATCATGCAAAcaagggaagaaaaagaagagagtaAACCTTATTACAGGGTGTTCTGTTTCCCTCTGCAACATAAAAGAAAGCTCAAAAGTTAAAGTTTCTTCAACAAAAAGCAATTCAGTTGCTAGTGCAACTCCTATTTCTACTTGTTCTACAAACATATCGAGTTCTATAACTTCGTATTCTTCTTCCTCAGCATCATCATCATCTGGTTCTTTTAGAGGAATGCATTTAAGAAAATTTTCAGGGTGTTATGAATGTCATATGGTTGTTGATCCTATTACAGGAATTTCAAGTGTCCCTTCTCTTAGGAGATGTAATATATTTCCATGCCCTGAATGTGGGGATATTTTTGGGAAGTCTGAAAGCTTGGAGATCCATCAGACTATAAAGCATGCAGGTATATgatctttttaatttttataattttatagttttctCTAACCactggattttctttttcttttttcgaaCTGTTTCGGGATTGAAATGCTAGATATATTTGAAGGTAATATCAGGGAAATCTTGCGTTGACAGTAATTTAACCATTTATCAAATGACTTCAATGGAAGTAGTAACGAGTGTATTTTCTATTCAACAAGTGTTAACAGGTGGTTATATTTCCTGAAAGTATTTGGGGAATTAAAATGCAGGACGTATTTAACAACTTTAATTGTTTGATCTTTATTAAGTATATTGTCTGGACAAAAGAAAGATATGCGTGGGATTTTATGAATGCAAAACCATATAGTACTGTTCAAATATCTTTGGACACCCTGAAGTTCAGTTGAGAACCTAAAGTTATATCAATAGTTTTATTTTACTACAACGCTATTGCTTTATAACATATACACTTTGTACTGTAACATACATTCGTATTTCTCCTTTTTAGATCAACTCTCACTAACTCAGACTCGTATTAATACTTGCCTTACTTAGAATTGTTTGATCTATCCGAGGTCTAATGGTCCTAAAGATATGATTCATTTTAGCGAACTAATTATGTCGAGACGCACTGTACTATCAGAATTTGATTGTATATGACTTTTAAAGTTGATTGTATAATGATGATTCAATTTTCTTACATTTTatctcatttttatgtcatgtACATGAACACGTATGTAGGATGCATGTCACACACCtgattatgtataaataaaaaaacaaaatttataaatctaaTGTTCAATATATACTTCTTTTTGTTATTATTTCAGTAACAGAACTAGGCCCAGAAGACAGCAGTAGGAACATAGTAGAAATAATCTTCAAGTCAAGCTGGCTAAAAAATCGCCCTTCCTCATACCAAATCCAGAGAGTCCTCAAAATACACAACACTAAAAACACAATCTCCAAATTCGAGTCATACCGGGACTTCATAAAACTGAGAGCCGTCAAATTACCGAAAAACCACTCTAGGTGCATCGCCGACGGCAACGAGCTCCTACGGTTCCACAGCACAACCTTGAAATGCCCTCTCGGGCTTAATGGGTCGAGCAATCTATGCATCTCGACCCAGATCCCACAGAAGTGCAACGTTTGCGACGTTATAAAAGATGGTTTTGTCCCTGATGAAAGTGGTGGCATTCAAACCATGGCTACGAGCGGTCGAGCTCACGATGTTGTGAAAGTTGGAACGAATGGTGGCAACGAGAGGGCGATGATTGTTTGTAGGGTTATCGCCGGAAGGGTCAGCAGTGATGACAGCGTTCGTGAAAGGGGAGACGAGTTTGATTCATTTGCTAGCAATGTGAGCGTTTATTCAAGTTATGATGAGTTGTGTGTGTTTGATTCTGAGGCTATATTGCCTTGCTTTGTGATCATCTACAAATGCTTCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247001.1	1.2e-98	uncharacterized protein LOC109824771
trEMBL	A0A5P1E6C6	8.8e-99	C2H2-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G75710.1	48.49	4e-70	261		C2H2-like zinc finger protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa0G03544	AT1G75710.1	299	111	8	114	381	174	460	48.49	4e-70	261
Asa0G03544	AT4G27240.1	237	105	5	152	379	198	430	50.21	2e-56	216
Asa0G03544	AT5G54630.1	245	107	6	152	379	233	471	46.94	4e-55	212

Ortholog group

Species	Genes
Allium cepa	g446020.t1
Allium fistulosum	AfisC6G02053
Allium sativum	Asa0G03544.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0046872	F	metal ion binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network