Detail information of Asa0G03973


Location
GeneChrStartEndStrand
Asa0G03973scaffold30205135654141239-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020263134.11.9e-215SNF2 domain-containing protein CLASSY 3-like
SwissprotF4I8S3.11.3e-152Protein CHROMATIN REMODELING 31
trEMBLA0A5P1F4K01.4e-215Helicase ATP-binding domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G05490.141.405e-162 569chr31chromatin remodeling 31

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag127968.t1; g127970.t1; g336082.t1; g392531.t1; g422816.t1
Allium fistulosumAfisC1G00240; AfisC4G03304
Allium sativumAsa0G03973.1; Asa0G05279.1; Asa4G02412.1; Asa4G02413.1
Arabidopsis thalianaAT1G05490.1; AT3G24340.1
Oryza sativaLOC_Os02g43460.1; LOC_Os05g32610.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily78398170.59e-20
PF00271.28Helicase_CFamily1136124457.41.5e-15

Gene Ontology
AccessionOntologyName
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0004386Fhelicase activity
GO:0005524FATP binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K10875RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like proteinEC:3.6.4.- Homologous recombinationko03440

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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