result

Gene information

Detail information of Asa0G04955

Location

Gene	Chr	Start	End	Strand
Asa0G04955	scaffold5307	63631	65523	+

Sequences

CDS

>Asa0G04955.1
ATGAGTGACCACTCCACAAATCAGTTAAATCTGAGCACATTCTTCATAAATCAAGAAACATACGCAGAAAATCTCTCGTCTTCCTCGAGCGAAAACCCTATCCAGTCTTCCTCTACAAGCCACGAAGCGGAATCGTCGAACGATTCAGATAGGTTTTCAGAATCACCTCTAAATTACATAACCCATGTCCTAATGAACGAAAACGATAAACCCGAAAACTACCCGGCGCATACCAGTCTCGAAGCCACCGAGAAACCTTTCTACGACCTTCTTGGGATTTCATACCCTCCATTACAAAGTTACATCAACCCAAATAACTGGTACGACTATTCCCCGTACCAAGTACCGTTCGAGTTCACCGGCAACTCGGTCTTCGGCATCACAAACAAGTTTGGCATCGATCCGGCTAAGCAGTTCAACAGAGGAGTCGAAGAAGGTCTCAAGTTCCTTCCAGATATAAACACGATCGATCCTTATGGATTTTCAATGGCTGAGATAATTGCAATCAACTCTGAAAAACAAGAAAGAGTTAGAAAAAACCCAGATCACGATGAGCCTATCGATGATCGAAGGAAGGTCAAACAGTCGGCCGCTTCAACGGAACCTGTGGACAGCAGCTTGTTCGATGAAGTATTGCTTTGTGAGGACGACAAGTTTCCAAAATCGGTGAAGGACATTCGGAAAACCTTGCAAAATGTCACGATCGGAAACAAAAGAGGAAGAAGGAAGAAGCACTGTGAAAAAGACAACAGGGTCGACGTTGACCTCAACACCATACTCACCGAGTGTGCTCAAATGGTAGCTTCTAACAACCATGAACAAGCCGATCGTCTACTAGAAATGATAAGGTGCCATTCATCGCCCACTGGGGGCGGGTCGCAGAGAATGGCCCATTACTTCGCAAACGGCTTGGAAGCGCGAATAGCGGGCAGAGGGGTCGACCTCTACAGGAACATGGCACGGAGGGAAACCGCTTCTGATTTCATGAAATCGTATCAGCTTTACGTGGCCGCCTGCCCTTTCAAGAAAGTCTCATACTATTTTTCCAACCAGACCATTTTAGATATAATTGGTAAGGCAAGGAGTGTGCATGTTATCGATTTCGGGATCAACTACGGGTTCCAGTGGCCGTCATTGATAAAACGGTTGTCGGCCAGACCCGGAGGGCCGCCCAGGCTTCGGATTACGGGGATCGATTTTCCGGAATCCGGGTTTCGGCCATGGGAAAGGATAGAGGAGACGGGAAGGCGCCTTGGTGAGTATGCTAAAAGTTTTAAGGTGCCATTTGAGTACAACTGTATAGCCAGTAAATGGGAGAACGTACGAGCTCGAGACTTGGAGGTTAGTGGGGGTGCTGAAGAGGTTTTGGTAGTGAACTGTTTGTACCAGATGAGGTATTTAATGGATGAAACGATGGAGATGGACAGCCCTAGAGATAGGGTGCTTAAAATGATAAGGGGATTGAAGCCGGATGTTTTCGTGCTTGGGATTGTGAACGGGGATTATAATGCGCCCTTCTTTTTGACGAGGTTTAGGGAGGCGATGTTTTATTTCTCGGCATTGTACGATATGAAGGACACGATAGTGCCGAGAGAGCACGAGGTGAGGTGCTCAGTGGAGAGGGAGATATTGGGGAGGGAGGTGATGAATGTGGTGGCATGTGAAGGGGCGGAGAGGGTGGAGAGGCCTGAGAATTACAGGCAGTGGCAGGCGAGGAACGTGAGAGCCGGGTTTGTGCAGCATGAGGTGAATGAGGAGATTATGAAGAAGGCGAAGGAGAAGGTGGATATGTTCTACCATAAGGAGTTTGATGTGGAGGAGAGGAGTAGGTGGCTCCTACAAGGGTGGAAGGGGAGGTCAATATACGCGCTGTCGTCCTGGAAACCCAAGTAG

Protein

Gene

>Asa0G04955.1
ATGAGTGACCACTCCACAAATCAGTTAAATCTGAGCACATTCTTCATAAATCAAGAAACATACGCAGAAAATCTCTCGTCTTCCTCGAGCGAAAACCCTATCCAGTCTTCCTCTACAAGCCACGAAGCGGAATCGTCGAACGATTCAGATAGGTTTTCAGaatcacctctaaattacataacCCATGTCCTAATGAACGAAAACGATAAACCCGAAAACTACCCGGCGCATACCAGTCTCGAAGCCACCGAGAAACCTTTCTACGACCTTCTTGGGATTTCATACCCTCCATTACAAAGTTACATCAACCCAAATAACTGGTACGACTATTCCCCGTACCAAGTACCGTTCGAGTTCACCGGCAACTCGGTCTTCGGCATCACAAACAAGTTTGGCATCGATCCGGCTAAGCAGTTCAACAGAGGAGTCGAAGAAGGTCTCAAGTTCCTTCCAGATATAAACACGATCGATCCTTATGGATTTTCAATGGCTGAGATAATTGCAATCAACTCTGAAAAACAAGAAAGAGTTAGAAAAAACCCAGATCACGATGAGCCTATCGATGATCGAAGGAAGGTCAAACAGTCGGCCGCTTCAACGGAACCTGTGGACAGCAGCTTGTTCGATGAAGTATTGCTTTGTGAGGACGACAAGTTTCCAAAATCGGTGAAGGACATTCGGAAAACCTTGCAAAATGTCACGATCGGAAACaaaagaggaagaaggaagaagcACTGTGAAAAAGACAACAGGGTCGACGTTGACCTCAACACCATACTCACCGAGTGTGCTCAAATGGTAGCTTCTAACAACCATGAACAAGCCGATCGTCTACTAGAAATGATAAGGTGCCATTCATCGCCCACTGGGGGCGGGTCGCAGAGAATGGCCCATTACTTCGCAAACGGCTTGGAAGCGCGAATAGCGGGCAGAGGGGTCGACCTCTACAGGAACATGGCACGGAGGGAAACCGCTTCTGATTTCATGAAATCGTATCAGCTTTACGTGGCCGCCTGCCCTTTCAAGAAAGTCTCATACTATTTTTCCAACCAGACCATTTTAGATATAATTGGTAAGGCAAGGAGTGTGCATGTTATCGATTTCGGGATCAACTACGGGTTCCAGTGGCCGTCATTGATAAAACGGTTGTCGGCCAGACCCGGAGGGCCGCCCAGGCTTCGGATTACGGGGATCGATTTTCCGGAATCCGGGTTTCGGCCATGGGAAAGGATAGAGGAGACGGGAAGGCGCCTTGGTGAGTATGCTAAAAGTTTTAAGGTGCCATTTGAGTACAACTGTATAGCCAGTAAATGGGAGAACGTACGAGCTCGAGACTTGGAGGTTAGTGGGGGTGCTGAAGAGGTTTTGGTAGTGAACTGTTTGTACCAGATGAGGTATTTAATGGATGAAACGATGGAGATGGACAGCCCTAGAGATAGGGTGCTTAAAATGATAAGGGGATTGAAGCCGGATGTTTTCGTGCTTGGGATTGTGAACGGGGATTATAATGCGCCCTTCTTTTTGACGAGGTTTAGGGAGGCGATGTTTTATTTCTCGGCATTGTACGATATGAAGGACACGATAGTGCCGAGAGAGCACGAGGTGAGGTGCTCAGTGGAGAGGGAGATATTGGGGAGGGAGGTGATGAATGTGGTGGCATGTGAAGGGGCGGAGAGGGTGGAGAGGCCTGAGAATTACAGGCAGTGGCAGGCGAGGAACGTGAGAGCCGGGTTTGTGCAGCATGAGGTGAATGAGGAGATTATGAAGAAGGCGAAGGAGAAGGTGGATATGTTCTACCATAAGGAGTTTGATGTGGAGGAGAGGAGTAGGTGGCTCCTACAAGGGTGGAAGGGGAGGTCAATATACGCGCTGTCGTCCTGGAAACccaagtag

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252505.1	3.0e-179	scarecrow-like protein 9
Swissprot	Q9XE58.2	2.0e-127	GRAS family protein 2
trEMBL	A0A5P1FEW5	2.2e-179	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G07530.1	44.59	6e-134	474	ATGRAS2;GRAS2;SCL14	SCARECROW-like 14

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa0G04955	AT1G07530.1	545	258	10	127	629	224	766	44.59	6e-134	474
Asa0G04955	AT2G29060.1	663	291	18	45	629	50	693	41.48	1e-133	474
Asa0G04955	AT2G37650.1	703	335	18	2	630	27	715	39.83	4e-130	462

Ortholog group

Species	Genes
Allium cepa	g114060.t1; g114078.t1; g114084.t1; g170542.t1; g355288.t1; g410113.t1; g52451.t1
Allium fistulosum	AfisC3G02603; AfisC5G04335; AfisC6G01173; AfisC7G00399; AfisC7G04696
Allium sativum	Asa0G00012.1; Asa0G04955.1; Asa3G04574.1; Asa7G02629.1; Asa7G04131.1; Asa8G05220.1
Arabidopsis thaliana	AT2G37650.1; AT3G46600.1; AT3G46600.2; AT3G46600.3; AT5G59450.1
Oryza sativa	LOC_Os01g62460.1; LOC_Os01g62460.2; LOC_Os01g62460.3; LOC_Os03g48450.1; LOC_Os03g48450.2; LOC_Os03g48450.3; LOC_Os03g48450.4; LOC_Os04g50060.1; LOC_Os04g50060.2; LOC_Os11g47870.1; LOC_Os11g47890.1; LOC_Os11g47900.1; LOC_Os12g38490.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	258	628	385.4	2.2e-115

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network