result

Gene information

Detail information of Asa0G05087

Location

Gene	Chr	Start	End	Strand
Asa0G05087	scaffold5882	17098	19997	-

Sequences

CDS

Protein

Gene

>Asa0G05087.1
ATGGAGGGTAGCAGAAGTCCTTCATGTCTGCTTGGATTTGGAGATCCTCATCACATAATTAACATGCATCCTCCTCTAAACAACAATAACACCAACAACAACTACCACTCTTTGTTCCTACCTCATCACAGCCTTCAACACAACAACGAAAATTATGACAACAACATCACCAAAGCCAACATCATGTCCCATCCTCACTATCCAAGACTACTTGCTTCTTACATCAACTGCCAAAAGGTAggtataatttttttaacatgtgtGCATAATCaaagaaaccctaaccctaaactaattaaaaatttgcACTCTCTATATGCAAGGTTGGTGCTCCTCAAGAGGTAGTGGCAAGGTTAGAagaagcatgctcttcctcacttatGATTGCAAGAGCATCACCTTCGAATTCTTTGATTATTGGACAAGATCCAAGTCTGGATCAATTCATGGAAGCTTACTGTGAGATGCTCACGAAATATGAACAAGAACTCTCGAAACCTTTTAAAGAAGCCATGCTTTTTCTTTCTCATATTGATGCTCAATTCAAGGCTCTTTCACTTTCTAGTAGTACTCCTTCACCTTCGCTTAATCAAGGTGTAATTTTATctatgttttgttttttatttgttggAAAAGTGTGTTAGCGTacttaaatatgttttgaaaggtcTAATcaacttttattaattaatttatggttGATAAAGTACATAAGTTAGTTAGCTCTCATTAAATAATCTGTTGTGGTATATGTTAAGCTCTAATCACCCATATAATAATACTCTCTTGAACCAagtattctatttttctttcaaagtaAACTTAGTACTCCAAGAAACATGGGAAATGCGCTAACATATTTTCTCTTTCTCTGAAAGATTTTGACTTGTTTTTGTTGTTTTCTCTGAAGTTACTATCCATTAAATGTTGTAGTATTGACTGCAACATTCTCTTTACGTTGCTTAGAAATTAGCGATGGATTGAGCCCTTGGAGAGatcaaagtattattattatttccctTCATGGACAAATATTTGAATATGATTATATTTTCATGTGAAAGTGACTGTTCTGAATTTctgattattttcttcttcttctgtttcgATGTCTTGAAAAAAGACAGACCATTTTCCTGCTTAATTTAACAAACTTTCTTGGTTTGGAAGATTTTATGTTGGTGTGACTAAATTTAGTTGTCTCTGCGTTCTTTTTTgatcaaatttaaaatatgtatacattTAGTTTCACTTAAACATACACCAGCaaataaatgaatatgttatttgaCTTTTTGCTAAATGAAATAAACTTATTCTTTCTGGTTGCTTGACTGTGGGCAGTGTCCATTTTTTGATCTACTGATCAATTCTTCCTgtgtttttcatttttatatatcataCGTAACCAAATATATTTACGGATCAAAGTTGTTATCCTCGCATAGACCCCCATTTTCATTTCTATGCATAAGCCAAAAAAAAAACCCTCTTAACCGAGAATAATTGCATGTTAGAAAAGCGATTTTCATTGTAAATTTAAGTTATCTTCCTCACCTTTATTCGTTAATTTGCTTGGGTCAAAGTCATTATCTCATGCTTGGTAATTTGGGACTCCAATGTTACATaaattatttaatgtaaaattataatttaataaccaTTTGGCTGTAACTTGTTCATGTTGATATTCATGATCCTAGTTTAAAttgacatttaattatcatttggtTGTAACTTGTTCTTATTGATCTTCATGGTCCATATTCGAATTGTCATTTAATAATCTTTTTGGTTGTAACTTATTCATATTGATCTTCATGATCCAAATTTGAGTTGGCATTTAATAATCTGTGTACAGTGCAACTAGTTTGATCTTACTTCTTTAGCGTGGCAAATCTACCCATCATAATTATCTTCTTTTGCTATTACTAATTTGTGATATAGGAttgatgtattattattattttgaaagtttACAGAATGTTCGGTTTTTAgtatctagaaaaatatttctaagTATATCTTTATTTCTCTAGTATcgcttcaaaaaatatatttattttatcttcatttctGTGGTAAATTTTCAATGCTCCACACATACTCTATTGAGATGGGGAAAATGTACGAGCAACCACTTTGCAAGTTCACATACCAATGTTATCTACACTATGCTTACATTGACAATGAGAGGCCAATGTATAATCATCCAAAATGGTGGATCATAGCCTAATTTTGGAGTACACCACAAATCCTTATGTGAACATTTGTAATATACATAACCTGTGTGCTTATTGATTAATGACAACTGTATAGCTTATAATAACATGGAGACATTGGAGAGGAATGGCTCCTCGGAAGATGATGGTGATCGTATTGCTTGTGAGAACTACATTGATCCTCAAGCCGAAGACCGAGAACTCAAAGGTCAATTACTTCGAAAGTATAGTGGATATCTAGGTAGCTTGAAGCAGGAATTCCTGAAGAAGAGGAAAAAAGGAAAGCTTCCCAAGGAAGCAAGACAACAACTTCTAGAATGGTGGAATAGACACTACAAATGGCCTTACCCTTCGGTAACTTTCTTATGGCTTAATGAGTCGGTAGAAAAAACTAAAGAAATTTCTTTTAGTATCTTGTATCATGTTCACTGATATATTGAAACgaaacttttctttttcttttttcaggaGTCTCAAAAGCTAGCTTTAGCTGAAACGACTGGTTTAGACCAGAAGCAAATAAACAACTGGTTTATAAACCAAAGAAAAAGACACTGGAAGCCTTCTGATGAAATTCAGACATACGTAGTTATGAATGATGCAGCTCATTCTCATTATTTCATGGATAATGGTTATGCAAATCCTTACCAACTCGATGTCAATCCAGCTCTTATCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK70249.1	1.3e-117	uncharacterized protein A4U43_C05F31790
Swissprot	P46608.1	6.3e-101	Homeobox protein SBH1
trEMBL	A0A5P1F0B6	9.4e-118	Ubiquitin-like domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G62360.1	68.68	3e-87	318	BUM;BUM1;SHL;STM;WAM;WAM1	KNOX/ELK homeobox transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa0G05087	AT1G62360.1	265	70	6	57	318	121	375	68.68	3e-87	318
Asa0G05087	AT4G08150.1	274	111	8	53	317	130	396	53.65	5e-67	251
Asa0G05087	AT1G23380.1	263	125	5	45	305	73	324	47.53	2e-61	232

Ortholog group

Species	Genes
Allium cepa	g370466.t1; g396453.t1
Allium fistulosum	AfisC5G05542; AfisC6G02724
Allium sativum	Asa0G05087.1; Asa8G04023.1
Arabidopsis thaliana	AT1G62360.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03790.10	KNOX1	Family	58	95	74.7	3.2e-21
PF03791.10	KNOX2	Family	111	156	71.7	2.6e-20
PF03789.10	ELK	Domain	204	225	40.3	2e-10
PF05920.8	Homeobox_KN	Family	244	283	61.1	6e-17

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15613	MEIS1; homeobox protein Meis1	EC:-	Signaling pathways regulating pluripotency of stem cells	ko04550

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network