Detail information of Asa0G05496


Location
GeneChrStartEndStrand
Asa0G05496scaffold79996600473192-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAEX92969.18.0e-79MADS box protein 5, partial
SwissprotQ5K4R0.31.9e-56OsMADS47
trEMBLH2BL615.8e-79MADS box protein 5 (Fragment)

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G22540.157.561e-67 253AGL22;FAQ1;SVPK-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag411532.t1
Allium fistulosumAfisC4G02946
Allium sativumAsa0G05496.1
Arabidopsis thalianaAT2G22540.1; AT2G22540.2; AT4G24540.1
Oryza sativaLOC_Os02g52340.1; LOC_Os03g08754.1; LOC_Os03g08754.2; LOC_Os06g11330.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain105785.79.5e-25
PF01486.14K-boxFamily9117161.36.7e-17

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0046983Fprotein dimerization activity

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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