result

Gene information

Detail information of Asa0G05939

Location

Gene	Chr	Start	End	Strand
Asa0G05939	scaffold9926	59376	61446	-

Sequences

CDS

Protein

Gene

>Asa0G05939.1
ATGTCCCTTCCTCACCACTCGAAGTCCGATCTTGTCTCCATCGACAACGGCAGGACCAAGGCCTACAAAGTTGCCGCCTGCGTCACTAAATATAGTGCCAATCCGTCGCTCATCTCTGTGCCTTCTTTGTCACTTTCGAGTATTGCTGTCACTACCGCCTAGCCAAGCTCCAGTTCCGTTCTTCGTCACTGCGAAGGTGAGTTCTTTAGCTCACGAGTCACTTCGATTCAAGTATCTCAACGACGAATATTAACTAAATACATATCGGTTTGGTCTATGATATTAAATGATAGTGGCTTGTCCGATTTCTCATGTCTTGATTTTACTGGGTGATTAAATTTAACTATCCAATAGTTGTGACTGTTGAAATTTAGTGTAAGCCATGTTTCCTATTTCATAGGAAATCCAGTAATGATTTAACCCTGGATCCTTGCCTTGCTTAAGTTCTAACCCCTGTTATTTACTGCTGGTTACCGTCAATCGAGTGCTCATGCACATTTCGTCCTGAAGTATGggatatatacatatttatttatgtgtatacatgtatgatTTGTATGTGTGTAATCTGAACATGTTTTGTTTATATGAAATCTTACCCCCTTGTGGTATACGTATTAGACTTGAATGTACATTATCTCGAAACCTGATCATATTCTTGTCTCCAGAACCCATAGCTAGCTTTTATGTTGTCCAAACCTGATCCCTTCCATTTGCGGGTTTACTTATATGTGTTTTATACTGTTTGACATGCTTAGAAATACATACAAGTTTATGGACATGTTACATTTTATTAAAAGATAGAAGTCAACTGGTAACTTGACATTGTAATGACTGTGCAGCATGCACCTGATAGCATGACCCTGGCACAGTTTACGTTGtttattttgtgtatataaaaTGATTCTGACCTTTTCAGCTATGTGTATTTGTATGTGTTCTCCTTGGCAATGCAAATACACCCATATACCATCATCATTTACTTGCTTTTTGGTCACTATGCACATACTGGTCTCAGCCATTTCAACactgaattgctatatataatacaTGCATTATTAGTAAAGAGGTCATTTTTAGGACAAAGCTATCACAACAGCtttgattatttgtttgtcatgatttttttttttgattctcttatgatccaaaccatagCATGCATGTATTATTATAGTTCATGAACATAACATATGTTTAAATTGACATTAGTGTGCGCATCAAGGAATGGTTAGATATCTTGAAGTGCAATGCATTTATATAGgggaaaatatgattcaaaaaccAGAGCAAGCGGTTTACTTCAGTTGTACATTTGTCTAATTTCAACCCAGTTCCCAGAGAGAGCTGTGATTGTGTTGGTGGATGCACAGATTCtgataaatgttcatgtgttgttCGAAACGGAGGCGAGCTCCCTTTCAATAGCGAAGGCTTGATAGTCAAAGCCAAGCCCTTGATATATGAATGTGGCCCATCTTGCAAATGCCCTCCTTCTTGTTCTAATGAAGTCAGTcaaaatgggatcaaatttccatttgaggtattcaaaacagagaaaatggGTTGGGGAGTGCGATCTCGAGCTTTCATACCCATGGGaagcttcatatgcaagtttgtaggagaGCTTCTAAAGGACGAAGAAGCTCAAAAGAGGACCAATGACGGCTATATGTTTGCAGTCGGTAATAATTACTATGATGATGTGCTATAGGAAGGACTTTCTTCAGTTCCTTGCTTGCAAATAAGAGCTCCAAGCGATGATTCTGAGTACGATGGAGGGTTCAGCATAGATGCTTCAGTATATGGAAATTTTGGAAGACTAATTAACCATAACTGCACTCCTAACCTTTATGCTCAAAATGTACTCTATGACCAAGATGATATGAGAACGCCACATATTGTATTCTTTGCATGCGAAGACATTCCACCAATGCAAGAGCTGAGTTATCATTACAACTATACCATTGATGGTGTTCATGATTCTAATGGTAACATAAGGAAGAAGAACTGTTACTGTGGCTCCATTGAGTGTACCGGTAGACTCTACAGAGGTTTCACGTTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020240672.1	4.1e-73	uncharacterized protein LOC109819373
Swissprot	O82175.1	3.6e-58	Suppressor of variegation 3-9 homolog protein 5
trEMBL	A0A6P5FFF8	2.4e-67	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G35160.1	49.55	1e-56	216	SGD9;SUVH5	SU(VAR)3-9 homolog 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa0G05939	AT2G35160.1	220	78	4	41	228	576	794	49.55	1e-56	216
Asa0G05939	AT2G22740.1	249	82	5	41	228	542	790	42.57	1e-48	189
Asa0G05939	AT2G22740.2	249	82	5	41	228	542	790	42.57	1e-48	189

Ortholog group

Species	Genes
Allium cepa	g233731.t1; g63389.t1
Allium fistulosum	AfisC1G08240; AfisC3G08379
Allium sativum	Asa0G05939.1; Asa1G00655.1; Asa1G01815.1; Asa1G03092.1; Asa2G06893.1; Asa4G03726.1; Asa4G03796.1; Asa6G00357.1; Asa6G03184.1
Arabidopsis thaliana
Oryza sativa	LOC_Os04g45990.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF05033.13	Pre-SET	Family	46	104	40.2	3.9e-10
PF00856.25	SET	Family	135	198	53.8	2.7e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0008270	F	zinc ion binding
GO:0018024	F	histone-lysine N-methyltransferase activity
GO:0034968	P	histone lysine methylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11420	EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT	EC:2.1.1.355	Lysine degradation	ko00310
K11420	EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT	EC:2.1.1.355	Longevity regulating pathway	ko04211

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network