result

Gene information

Detail information of Asa1G00068

Location

Gene	Chr	Start	End	Strand
Asa1G00068	chr1	14480614	14483647	+

Sequences

CDS

>Asa1G00068.1
GAGCAGGAGCAGGAGCAGGAGCCGGAGCCGGAGCAGAAGCAGAAGCAGAAGTCGAAGCCGGAGTAGGAGCCCTTTATATGATCGTGGGCGGAGATATTTAAGGAGCAGAAGCCGAAGTAGGAGCCCATACTATCGCCCTAGGAGAGATCATGATAATTCGATGGACAGGGGTAGACCAAGAATACCATGCAGAGATTTTGCAGCGGGGAGATGCCGAAGAGGCATTGATTGTAGGTACGTTCATGATGATACTTCTCGAAGGTCATATAATTATCATGACGTTGGTGAGCGTAAAGCTGAAAAAGAAAACGTGAGTTTCTCAAGGGAACCATCTGATAACGCATATAGAGATACAAGAGCATATCCACGATATTCAAATGAACCAGCTGAAAATACTCGTAGAAATGAGAGAGAAAGTCTTCAAAATTCAAGAGAACCAGTCCACAACACAAATAGAAATGAAAGAGAAAGCTTTAATGATTCTAGAGAATCAATTGACCGACACAAAAATGAGGGAGAAAATTTTCATGCTTCAAGAGAACCAATCGATGACGTACATAAAAATGGAAGAGAGAGTTTTCATGATTCAAGAGAACCAATCGATAATACATACAGAAACGAGAGAGAAAGTTATCGTGATTCAAGAGAACCAATCGACCATAGACGTAGAAATGAGAGAGAAAATATTCGTGATTCCAGAGAACAAATTGACAACAGATGGAGAAATGAGAAAGAAAATTTTGGAGATTCAAGAGAACCAATGGAGTATACACGTAGAAATGAGAGAGACAATGTTCGAGATTCGCGAGACAGGTTCTCTAGAAATGACAGTAGACCTCCTGTTGCCTGTTATGATTTTTCTAGAGGTCGATGCCAAAGAGGTTCGGAATGCAAATATGCTCATAACGATTCTTCTTCTTTCGATAATGGAAGGAGCTACAGTAGTTCTAGAGATGAATATAGAACGAGTACTCAAAGGGTCATTAGAGACACAGTTTGCAAATTCTACGCTGATGGTTGTTGTAGACGTGGTCGAGCTTGCTCTTTCTCTCACGTAATCCTGGGGCCACGTGACGATAGTAATGGTCAAAATCAGCAGCAGCATCAAACTCAAATTCAAAACAAAACTTTGACGTTAAATCAACCACAAAATGCTATCAATCCTCTTCCCTTCCCTTTACAGACACCAAATATTCAAATGCCACAGTTAGTTCCACCAATGCCTGTCAATGAGCAAATGCCACAAGCTATGCTTTCGATGATCCAAAATGGGCAGAATCAGTTCGTTACACAACCAAATTCAAATTTCAACATTCCTGTACAAAATTTGCCTTTTGTTCCTCCTCAAAACTTCAACTTACTTCCGTCTAACACCGTAGGACAGCAAGTTCAGCCTGCTCTTCCTTTCGCTGCCCCTAATTTCGTAGGACCTACCATTCAGAACATCCCTTTCAATGACAATACTATTCCTCAACCTCAAAACTCTGAAAATCAAATAGCTGCTTCTGAAATTCGGTCATCTAATATGAATAATGATGTTGCTCAAAAAGTGGTCACTAGCGAGCAAGCTGCTCAAATAACAAACTTATCAGCATCTTTAGCGATCTATTTCGAAAATCAAGGTGCCCTCAACCCTCAAATTGGCACCGAATCAGTGACAGAAACAGAGACTAAGAAAAGTACTGAAGTGGAGGTGCAGGAAGCAGCAGTGAAGGAAACTGGAACTGTTAGTGAAAAGAAAGAAGGTGAAGCCGAGGAAAGTAAGCAAACCAAAGATGGAAAAGGAATGAAACTGTTCAAATGTGCTATTGTTGATTTTGTTAAAGATGCATTGAAGCCGAACTGGAAAGAAGGTCAGTTGAGTAGAGAAGCTCATAAAACTATAGTAAAGAAGGTTGTAGAGAAGGTTACAGGTGCAATGCATAGCCAGAATATTCCGCAAACGCAAGAGAAAATTGATATTTATATGTCACACTCTAAACCAAAGCTCTCAAGACTTGTTCAAGCATATGTAGAAAAATATGTGAAGGGCTGA

Protein

Gene

>Asa1G00068.1
GAGCAGGAGCAGGAGCAGGAGCCGGAGCCGGAGCAGAAGCAGAAGCAGAAGTCGAAGCCGGAGTAGGAGCCCTTTATATGATCGTGGGCGGAGATATTTAAGGTTGGAATTCACTGAAATAAGTCTCGGTTCTTTGCTAATATTTTGACACGGTTTTCGTTTAGGTCTGTCTGCAATTATCCAAATCCACGCATAGTAGAAGCATGCTAATATACCACACTGTTTTCTGATTAAATactttcaagttatgttataataaaaaaaattcatgcccAATATACCTTGAGAAGTCCAATAATTTGTAAATGCCAAATTTGTCCTGAAATGGTAATGCTTCATGTGCTTCGAGTAATATTTTGTTATGTGTGTATCAGGAAAATGTTGATGAGAAGGTTTATCAAATTTTTAATGaacacatacatatgcatgtgtatacatatatgcatatgcataagtTAGCCTGCAAGGGAAAAAAGTAGGGGATCCAAATAAACATGAAGAAGAAAGTAAGAAAAATGATTTGCTGACTACAGCTATAAGAAGAATGAAAATTCATATGACAGTCCCAATTATTCTTTGGGTGTCAGTGGGGGGACGAGGAAAATGATGCGTGCGTGTGCGTTATGTGTGCATTGTGCGTGCGTGTGTGATTCTTCATCCTTTTGATATGTTATACAGTCCCAATTATTCTTTGGGTGTCAGTGGGGGGACGAGGAAAATGATGCGTGCGTGTGCGTTATGTGTGCATTGTGCGTGCGTGTGTGATTCTTCATCCTTTTGATATGTTATACAGGAGCAGAAGCCGAAGTAGGAGCCCATACTATCGCCCTAGGAGAGATCATGATAATTCGATGGACAGGGGTAGACCAAGAATACCATGCAGAGATTTTGCAGCGGGGAGATGCCGAAGAGGCATTGATTGTAGGTACGTTCATGATGATACTTCTCGAAGGTCATATAATTATCATGACGTTGGTGAGCGTAAAGCTGAAAAAGAAAACGTGAGTTTCTCAAGGGAACCATCTGATAACGCATATAGAGATACAAGAGCATATCCACGATATTCAAATGAACCAGCTGAAAATACTCGTAGAAATGAGAGAGAAAGTCTTCAAAATTCAAGAGAACCAGTCCACAacacaaatagaaatgaaagagaAAGCTTTAATGATTCTAGAGAATCAATTGACCGACACAAAAATGAGGGAGAAAATTTTCATGCTTCAAGAGAACCAATCGATGACGTACATAAAAATGGAAGAGAGAGTTTTCATGATTCAAGAGAACCAATCGATAATACATACAGAAACGAGAGAGAAAGTTATCGTGATTCAAGAGAACCAATCGACCATAGACGTAGAAATGAGAGAGAAAATATTCGTGATTCCAGAGAACAAATTGACAACAGATGGAGAAATGAGAAAGAAAATTTTGGAGATTCAAGAGAACCAATGGAGTATACACGTAGAAATGAGAGAGACAATGTTCGAGATTCGCGAGACAGGTTCTCTAGAAATGACAGTAGACCTCCTGTTGCCTGTTATGATTTTTCTAGAGGTCGATGCCAAAGAGGTTCGGAATGCAAATATGCTCATAACGATTCTTCTTCTTTCGATAATGGAAGGAGCTACAGTAGTTCTAGAGATGAATATAGAACGAGTACTCAAAGGGTCATTAGAGACACAGTTTGCAAATTCTACGCTGATGGTTGTTGTAGACGTGGTCGAGCTTGCTCTTTCTCTCACGTAATCCTGGGGCCACGTGACGATAGTAATGGTCAAAATCAGCAGCAGcatcaaactcaaattcaaaacaaaactttgaCGTTAAATCAACCACAAAATGCTATCAATCCTCTTCCCTTCCCTTTACAGACACCAAATATTCAAATGCCACAGTTAGTTCCACCAATGCCTGTCAATGAGCAAATGCCACAAGCTATGCTTTCGATGATCCAAAATGGGCAGAATCAGTTCGTTACacaaccaaattcaaatttcaacattcCTGTACAAAATTTGCCTTTTGTTCCTCCTCAAAACTTCAACTTACTTCCGTCTAACACCGTAGGACAGCAAGTTCAGCCTGCTCTTCCTTTCGCTGCCCCTAATTTCGTAGGACCTACCATTCAGAACATCCCTTTCAATGACAATACTATTCCTCAACCTCAAAACTCTGAAAATCAAATAGCTGCTTCTGAAATTCGGTCATCTAATATGAATAATGATGTTGCTCAAAAAGTGGTCACTAGCGAGCAAGCTGCTCAAATAACAAACTTATCAGCATCTTTAGCGATCTATTTCGAAAATCAAGGTGCCCTCAACCCTCAAATTGGCACCGAATCAGTGACAGAAACAGAGACTAAGAAAAGTACTGAAGTGGAGGTGCAGGAAGCAGCAGTGAAGGAAACTGGAACTGTTagtgaaaagaaagaaggtgaagccGAGGAAAGTAAGCAAACCAAAGATGGAAAAGGAATGAAACTGTTCAAATGTGCTATTGTTGATTTTGTTAAAGATGCATTGAAGCCGAACTGGAAAGAAGGTCAGTTGAGTAGAGAAGCTCATAAAACTATAGTAAAGAAGGTTGTAGAGAAGGTTACAGGTGCAATGCATAGCCAGAATATTCCGCAAACGCAAGAGAAAATTGATATTTATATGTCACACTCTAAACCAAAGCTCTCAAGACTTGTTCAAGTAAGCTTTATATTCTCTCTTTACCTGATTATACTGtgaaatttttatctatttatcctggtttaattattattgttgttatttttagttttaaaaaaaatattattgatgCAGGTATGTATTTGCTGCGTTGGCATTGATTCGATAAACCCctttcgattccattataaatgcATCATGCAGATTTTTTttcttaaaggaaaaaaaaaaagaataaaaaaaactctTCTGATTCATATTATTGCCTTTAACCAACCAAGTTGCTGGATGTATTAACTCTTCtaattgattttgttttatacgtgcAGGCATATGTAGAAAAATATGTGAAGGGCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	OAY63564.1	1.6e-32	Zinc finger CCCH domain-containing protein 55
Swissprot	Q9LIH5.1	7.6e-24	Zinc finger CCCH domain-containing protein 38
trEMBL	A0A199UFP2	1.1e-32	Zinc finger CCCH domain-containing protein 55

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G18640.1	28.63	3e-33	140		Zinc finger C-x8-C-x5-C-x3-H type family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa1G00068	AT3G18640.1	475	189	15	333	676	220	675	28.63	3e-33	140
Asa1G00068	AT3G26850.2	93	46	0	585	677	173	265	50.54	2e-22	104
Asa1G00068	AT3G26850.1	93	46	0	585	677	173	265	50.54	2e-22	104

Ortholog group

Species	Genes
Allium cepa	g275569.t1
Allium fistulosum	AfisC6G03556; AfisC8G06014
Allium sativum	Asa1G00068.1
Arabidopsis thaliana	AT3G18640.1
Oryza sativa	LOC_Os08g04170.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00642.21	zf-CCCH	Family	62	82	20.6	0.00028
PF00642.21	zf-CCCH	Family	282	302	25.0	1.1e-05

Gene Ontology

Accession	Ontology	Name
GO:0046872	F	metal ion binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network