Detail information of Asa1G00102


Location
GeneChrStartEndStrand
Asa1G00102chr12180657221823301-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_003529588.10.0e+00ISWI chromatin-remodeling complex ATPase CHR11
SwissprotQ7G8Y3.20.0e+00Sucrose nonfermenting protein 2 homolog
trEMBLI1KN240.0e+00ISWI chromatin-remodeling complex ATPase CHR11

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G06400.281.800.01686CHR11chromatin-remodeling protein 11

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Ortholog group
SpeciesGenes
Allium cepag151765.t1; g469405.t1; g506648.t1
Allium fistulosumAfisC4G01324; AfisC6G06606; AfisC8G05878
Allium sativumAsa1G00102.1; Asa4G01237.1; Asa8G00572.1
Arabidopsis thalianaAT3G06400.1; AT3G06400.2; AT3G06400.3; AT5G18620.1; AT5G18620.2
Oryza sativaChrUn.fgenesh.mRNA.85; LOC_Os01g27040.1; LOC_Os05g05780.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF13892.3DBINODomain8113423.94e-05
PF00176.20SNF2_NFamily202469241.68.5e-72
PF00271.28Helicase_CFamily49160468.64.7e-19
PF09110.8HANDDomain75384138.31.7e-09
PF09111.7SLIDEDomain8981008141.68.6e-42

Gene Ontology
AccessionOntologyName
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003682Fchromatin binding
GO:0004386Fhelicase activity
GO:0005524FATP binding
GO:0005634Cnucleus
GO:0006338Pchromatin remodeling
GO:0016817Fhydrolase activity, acting on acid anhydrides
GO:0016818Fhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0031491Fnucleosome binding
GO:0043044PATP-dependent chromatin remodeling

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11654SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5EC:3.6.4.- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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