result

Gene information

Detail information of Asa1G00876

Location

Gene	Chr	Start	End	Strand
Asa1G00876	chr1	222954126	222956031	-

Sequences

CDS

Protein

Gene

>Asa1G00876.1
ATGAGAAACCGAGCAGTTTTAGAAAATGTGCTTTTGCTGCTGCCTAAAGAGAAGGGTTCGGTTTCCTGCAGCTTTATGATCAAACTTTTGAAGCTAGCAAGTTTGGTTAATGCTGGTGAGAATTGCAAGAAGTATTTGGTTAGAAGAATAGGGAAGCAGCTGCAAGAAGCATCTGTGTCTGATCTTCTGATTTTTAGCAGCGAAGGCGATGAAGTAGCGTATGATATTGATCTAGTGACGAATATAGTCCTGGAATTTATAATGCAAGAGAATGCAAGTGCTCATACCGAGACGAAGTGTTGCACAGAGGTTGAAGAAGTCATGATTCCTGTATTTGTACCGGTTAGTTATAAGACTGCTGTAGCCAACTTGATTGATGGTTACTTGGTCGAGGTTTCAAAAGATCCCAAATTGACTGTTGCAAAGTTTGTTGAATTGGTGGAGATGGTCTCTACTTCTTTTAGGCCTGTGCATGATGGGCTTTATCGTGCCATCGACATGTACCTGAAGGTAATATTTGGAAACCTTACATGCACATTTTGTTATTTTCTTGCTATCTTGTATGTATCCGGTTCGGCGACCCTTTCCATCTCAACTCAGTATCCAAGTGAATGTCTTCACAATACATGGTTATGTCTAACAGTTATGAATGACTGCAtgctaaaaaaataagaaaatttcagCTAACtctaacttaaaaatcaaatttcaccgATCAGATATAAATGTTCTTCATGCTTTGATTATAAACTATTTTAAGGTTTACGCTTAATGATTTTTACATTCTATGCTGATTAGATTAGCTTTTCTAGAATGGTAGTTGTGCATGATTTGTCAACTTTATGCTCAATTGGACAATTTATTTGAGCCACTAGAGTTTTTTATTTAGAGCTGACTAAGATTGATGTGTTAACatctgtttttattttcaaatcaaagctctATGATTTTCAATCAGGGCAAGAGAACAAATTCGTTAGTTTGCCATCTGTGCTTGAATAATATGACATATATAGTGTAATAGATTCAGACAGCAGCAACAAACAAGTACATGGTATCATATTCATTGTTTTTGTCCTGTgcatcaattttcatttcattctttctcatttcaacaaaatgacgtGAGCCTCATTTTTCAAGTAATCGATAAAAAGCCTCTTCAGCAGTGTACTAAAGCTTCGCTTATATCGACCTAAATAAGTCATTTTTTAGCTTATTGAAAGCCAAAATAAGTTGATTTGCCTCCCAAGAAAGAAAAATAGTAATAACTTACTTAAGACAATCCAAACCAGCATGAACGAAAGATCCTGTTTATAAGCATGAAAAATAGAAATTGACGACAAGAGAATTGAGCCGCGGACCCTAGCTAATGTTAATTATTTGTACAAAATATTGATACTTGAAACATGTATACATACAGGAACATCCAGACCTGCTGAAGCCGGACAAGAAGAAACTATGCAGCCTGATGGACTGCAGAAAACTAACAGGGGACGCGACCGTGCATGCAGTCCAAAACGAGCGCCTTCCACTGCGCCTGATAGTCCAAATCCTCTTCTTCGAGCAACTGAGGTCACAATCCGTGTCCATTCCTTCAGTTGCACCAGATCCAGACATGGACCGTTCTCTCCTACCAAGAGAGAACGGTGCCTCCAATGGCAGCTCTGCCTCGACCAACACGACCAACACGGAAGATGACTGGGACAGGGATGTGACCAACTCCATCAAGTCTGTAACTTTGTCAAACGATAAGAAGAAAGGTGCCGTATCGAAGAAACTGATAAGCAAGCTTTGGTCGAGCAAAGGGCATAGTGTCGAGAACAGTGGCTCGGATACTTCAGAAAGTTTTCACATTGATGAGGTGAAATCGACGCCTTCAAGGAGTGTTAGGCATTCGGGTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257710.1	2.6e-89	BTB/POZ domain-containing protein NPY2-like
Swissprot	O80970.1	1.6e-59	Protein NAKED PINS IN YUC MUTANTS 2
trEMBL	A0A5P1FH34	1.9e-89	BTB/POZ domain-containing protein NPY4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G14820.1	47.97	7e-66	247	MEL3;NPY2	Phototropic-responsive NPH3 family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa1G00876	AT2G14820.1	271	129	7	1	265	265	529	47.97	7e-66	247
Asa1G00876	AT5G67440.1	321	145	7	1	312	266	557	42.99	7e-57	218
Asa1G00876	AT5G67440.2	321	145	7	1	312	229	520	42.99	7e-57	217

Ortholog group

Species	Genes
Allium cepa	g42542.t1; g529786.t1; g76178.t1
Allium fistulosum	AfisC3G01511; AfisC3G02150; AfisC5G06616; AfisC8G04902
Allium sativum	Asa1G00876.1; Asa1G00877.1; Asa2G01232.1; Asa2G01765.1; Asa4G04898.1
Arabidopsis thaliana	AT2G14820.1; AT2G23050.1; AT4G37590.1
Oryza sativa	LOC_Os03g10800.1; LOC_Os03g10800.2; LOC_Os03g10800.3; LOC_Os03g10800.4; LOC_Os03g41350.1; LOC_Os03g41350.2; LOC_Os12g39380.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03000.11	NPH3	Family	2	196	210.1	3.5e-62

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15095	E1.1.1.208; (+)-neomenthol dehydrogenase	EC:1.1.1.208	Monoterpenoid biosynthesis	ko00902

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network