result

Gene information

Detail information of Asa1G01000

Location

Gene	Chr	Start	End	Strand
Asa1G01000	chr1	262891457	262894052	-

Sequences

CDS

Protein

Gene

>Asa1G01000.1
ATGATATCATTCTTGAAGAAAATGAATATGCTATCTACAAATGATGGGAAGAATACCAATACTGCTAATTTGTTGGGGTTCACTCTTTCTTCTCACATAAACATGGAGCAAAACCAAACTGAAGCTTCTTCCATTCATAATAACTTCTTTCTTTCTCCTCATTTCAACCACCAAAGCCTATGCTATGGAGTTGAAGAAGCACAAAATGGAGTTTACTACCCTAACTATCTCAGTTCAATGCCTCTTAACTCTGATGGATCTCTTTGCTTCATGGACAACTTTAATCGATCAGAGGAAACAGGTTGTTTTACACTACCTTTTCTCTCATTTTAGCATATTTTTCTCCTGAGACagatttctttattttgttatttgaCATTTATGTAACTTATGAATATGTACTGTAGCAATTGTGCAATCTGTTGAATCACCTAAGCTTGAAGATTTCCTTGGAAGTGGAGCCCAAGACTACAACAATAGTGAAAGTAATGTCTATTATAATAGTCAAAATCAAGAACATGAAGAAGACAGAAACCAAGCTCTGGACATATCATATTTTCAGCCATTTCAAGAGATGGTAAGCATGAAAAACTGGGAGCATGGGCTGAATGGTGAAGTTGGTTTTGGTGATATGAACACATTAAGTTTGTCTATTAGTCCTGGAACTCAACCTACTTGTGTCAATGTCGCTAGTGAAGTGATTGGTCATGTGAATGTGAATGAGTACTTGCCCATTGAGTCGACCAATAGAAAGAGAGGAGTTGGGAAAAATGGACAGAAAGAGCCTGTTCATAGAAAGTCCATTGACACATTTGGACAAAGAACTTCACAATATAGAGGTGTTACCAGGTGAGTTTTGCTAAGTTTCTTTTTTGAAAATGTGGTTGTTTTATGTTTGCTAGAATTCGATTTTGTTTTTTGTCATGACAGGCATAGATGGACTGGTAGATATGAGGCTCATCTTTGGGATAATAGTTGCAAGAAAGAAGGGCAGACCAGAAAAGGAAGACAAGGTGCATTACCACACATAATAATTATCATTCTAGCAGTATGCTAAATTTGGATCTTTATAGATGTTTCTAACATGTTTCATTTTATCGTGTATCTCATGGAAATTGCATTGCTGTGCAGTTTATCTTGGTATGTTTACAttatcttctttttttttaaaaaaaaaaaatgatgatgcaGTGACATTCTGTGTAAACATGAtaacttgaattaattattttaggtGGTTATGATATGGAAGAGAAAGCAGCAAGATCCTATGATTTGGCTGCTCTGAAATATTGGGGGCCTTCTACTCATATCAATTTCCCTGTATGTGAACACATCGTTTACGTTTGTATTGTCTTCTGttcaactataaatttattttaagaagGCAGTTCTTATGCTGAATGTGGTTATTTTTAGCTGGATAGCTACAGAGCAGAACTGGAAGAAATGAAAAATATGAGCAGGCAGGAGTATGTAGCTCATTTAAGAAGGTGAAAATTTGCACTTTAAATCCTCAAATTTTAACCGAACTGGGGATCAAGAACTTCACTTATAAATACTTAACATGTAACTTATAGTTCTTTTGTTATGTTGCAGAAGAAGCAGTGGTTTCTCGCGGGGTGCTTCTATGTATCGTGGAGTGACAAGGTCATTATTTTGATGCTCTCTTCATATGTTAACTCATGTGCATATCATTAGGTTATAAGATTGCATATTTATGACAAGACCAATTTCTTGAAATTTTACAGTTAGAGGCTCATGGTTTTTGCTGTTTTTGTGTTAGGCATCATCAACATGGAAGATGGCAAGCAAGGATAGGAAGGGTATCAGGAAACAAGGATCTTTACCTGGGAACCTTTGGTAGCTTTTCCTTTGCATTTATGTTtgtacaaaatatgaaatgaaacatatatcaTATCATTATGTTACTAGATATTATTGACTAACTTGTTAAATCATCAAAAAAGCCACTTTAAAGTAAAACAAAAGTAAAACTTCATAAAAGCAAATTCTATCAAAGAATGTTTAATATGAATGTCTGCTGCTTATTCACAGGCTTTATTCATCAATATACGCCTTTATCTTTTAAACAATCAGTCCATACGCTTTATCATAAGGCTGGTTTCTACTTATTCCTACTTCAGTCTCATGATCTACAATCTTGActcattcactttataatttaaaatatgcatTAAACTTTGACACAGGCACTCAAGAGGAAGCAGCAGAGGCGTACGACGTCGCAGCAATAAAATTCAGGGGTTTAAACGCCGTAACGAATTTCGAAATATCAAAATACGACACGGAGAAGATAATGAACAGCAACTCTCTGCTAGCGACTGAATTCGTGAGGCGTAACAAAGCAATCGAAGCGAGCACCGAAGACGAAGGTGCGCAGCAGTTGAACAGAGGCCCGTTCGTGAGCAATCCGTACTTCCAGGACGCGAGCAACGCGATGCAGATGGTTGAACACGCGTCGAACGCTTCGTCTTTGGTGACGAGCTTAAGCAGCTCCGCGGAAGCGAGCCCGGTCAGTTCATGGATTCCGAACGTTACTTATGTGCCCGTGTTCGGAGGGTGGGGGCAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256374.1	3.9e-145	AP2-like ethylene-responsive transcription factor ANT
Swissprot	Q38914.2	5.7e-109	Protein OVULE MUTANT
trEMBL	A0A5P1F857	2.8e-145	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37750.1	50.82	2e-122	436	ANT;CKC;CKC1;DRG	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa1G01000	AT4G37750.1	486	166	14	14	438	8	481	50.82	2e-122	436
Asa1G01000	AT1G72570.1	283	85	4	145	421	129	402	64.66	3e-100	362
Asa1G01000	AT1G51190.1	336	129	6	109	436	64	388	55.95	4e-97	352

Ortholog group

Species	Genes
Allium cepa	g200100.t1; g213847.t1; g70270.t1
Allium fistulosum	AfisC5G00393; AfisC8G04796
Allium sativum	Asa0G02777.1; Asa1G01000.1; Asa1G04394.1; Asa3G00663.1; Asa3G03102.1; Asa4G04187.1; Asa5G00202.1; Asa6G00581.1; Asa6G06767.1; Asa7G03684.1
Arabidopsis thaliana	AT4G37750.1
Oryza sativa	LOC_Os03g12950.1; LOC_Os03g56050.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	241	300	46.0	4.3e-12
PF00847.17	AP2	Domain	345	394	44.4	1.3e-11

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network